Table 2. Additional sample and genome information.
| Species | Strain | NCBI Accession # | Coverage (x) | GC % | Freq. Variant Branches (k = 41) | Freq. Repeat Branches (k = 41) |
|---|---|---|---|---|---|---|
| D. asahinai | E-12502 (TKNK40) | VNJZ00000000 | 28 | 40.74 | 5.988E-04 | 4.636E-04 |
| D. auraria | 14028-0471.01 | VNJW00000000 | 39 | 40.32 | 4.143E-04 | 4.930E-04 |
| D. cf. bakoue | São Tomé Light | VNJL00000000 | 59 | 41.98 | 2.850E-03 | 4.005E-04 |
| D. birchii | 14028-0521.00 | VNKA00000000 | 36 | 39.89 | 1.639E-04 | 2.991E-04 |
| D. bocki | E-12901 (IR2-37) | VNJY00000000 | 41 | 40.32 | 1.961E-04 | 2.103E-04 |
| D. bunnanda | 14028-0721.00 | VNKE00000000 | 33 | 40.01 | 5.872E-04 | 2.895E-04 |
| D. burlai | 14028-0781.00 | VNJT00000000 | 45 | 40.51 | 3.317E-03 | 3.401E-04 |
| D. jambulina | 14028-0671.01 | VNJX00000000 | 32 | 40.61 | 1.230E-03 | 2.458E-04 |
| D. kanapiae | 14028-0541.00 | VNJM00000000 | 38 | 39.80 | 1.479E-04 | 1.175E-04 |
| D. lacteicornis | E-14104 (ISGB1) | VNKF00000000 | 25 | 40.26 | NA | NA |
| D. leontia | RGN 210-13 | VNKB00000000 | 37 | 40.24 | 3.179E-03 | 2.686E-04 |
| D. mayri | 14028-0591.01 | VNJN00000000 | 34 | 38.40 | 9.486E-04 | 6.182E-04 |
| D. nikananu | 14028-0601.01 | VNJV00000000 | 40 | 40.36 | 3.686E-03 | 5.446E-04 |
| D. pectinifera | 14028-0731.00 | VNKC00000000 | 22 | 38.05 | NA | NA |
| D. punjabiensis | 14028-0531.01 or MYS-170-D | VNJR00000000 | 47 | 39.39 | 2.047E-03 | 2.967E-04 |
| D. rufa | E-14802 (EHO91) | VNKH00000000 | 29 | 40.55 | 3.982E-04 | 4.826E-04 |
| D. seguyi | 14028-0671.02 | VNJU00000000 | 38 | 39.11 | 1.145E-03 | 4.656E-04 |
| D. serrata | 14028-0681.02 | VNKD00000000 | 31 | 38.61 | 1.098E-03 | 3.301E-04 |
| D. tani | 14020-0011.00 | VNJO00000000 | 40 | 40.02 | 1.221E-03 | 3.405E-04 |
| D. triauraria | 14028-0691.01 | VNKG00000000 | 28 | 39.95 | 3.047E-03 | 6.126E-04 |
| D. truncata | RGN23 | VNJQ00000000 | 51 | 37.89 | 2.813E-04 | 3.785E-04 |
| D. vulcana | 14028-0711.00 | VNJP00000000 | 29 | 41.70 | 2.531E-04 | 3.151E-04 |
| D. watanabei | 14028-0531.02 | VNJS00000000 | 38 | 38.99 | 3.715E-03 | 2.936E-04 |
For D. punjabiensis, we sequenced one of two potential strains. Additional sequencing is underway to confirm the strain identification. Coverage is equal to the total amount of sequencing data (after read decontamination) divided by the estimated genome size (from SGA Preqc (Simpson 2014)). The GC % is based on the unassembled reads, not the assembly. See the Materials and Methods for additional information. The frequency of variant and repeat branches in the de Bruijn graph (k = 41) was calculated by SGA Preqc. A k-mer size of 41 was chosen to maximize the number of species that could be compared. Sequence coverage was too low to estimate these parameters at k = 41 for D. lacteicornis and D. pectinifera.