Table 5. Orthogroup identity (by Orthofinder) for defense-related genes in the RenLon region and the copy number per species. In G. longicalyx, this number includes genes found outside of the RenLon region. G. hirsutum and G. barbadense copy numbers are split as genes found on the A or D chromosomes, or on scaffolds/contigs not placed on a chromosome.
| Description | Orthogroup | G. longicalyx gene in RenLon region | G. longicalyx | G. arboreum | G. raimondii | G. hirsutum | G. barbadense |
|---|---|---|---|---|---|---|---|
| adenylyl-sulfate kinase 3-like | OG0053444 | Golon.011G359300* | 1 | — | — | — | — |
| L-type lectin-domain containing receptor kinase IV.2-like | OG0053450 | Golon.011G361200 | 1 | — | — | — | — |
| T-complex protein 1 subunit theta-like | OG0053447 | Golon.011G360400 | 1 | — | — | — | — |
| protein STRICTOSIDINE SYNTHASE-LIKE 10-like | OG0000242 | Golon.011G363400 | 6 | 4 | 2 | 6 A | 9 A, 5 scaffold |
| Golon.011G363500 | |||||||
| Golon.011G363600* | |||||||
| Golon.011G363700 | |||||||
| Golon.011G363800 | |||||||
| OG0053454 | Golon.011G363300 | 1 | — | — | — | — | |
| TMV resistance protein N-like | OG0000022 | Golon.011G360100 | 25 | 22 | 5 | 10 A, 22 D | 12 A, 21 D, 1 scaffold |
| Golon.011G360300 | |||||||
| Golon.011G360500 | |||||||
| Golon.011G360700 | |||||||
| Golon.011G360800 | |||||||
| Golon.011G361000 | |||||||
| Golon.011G361100 | |||||||
| Golon.011G361400 | |||||||
| Golon.011G361900 | |||||||
| Golon.011G362000 | |||||||
| Golon.011G362400 | |||||||
| Golon.011G362700 | |||||||
| Golon.011G362800 | |||||||
| Golon.011G362900* | |||||||
| Golon.011G364000 | |||||||
| OG0028874** | Golon.011G359900 | 4 | — | — | — | — | |
| Golon.011G362600 | |||||||
| OG0028544 | Golon.011G363200 | 3 | — | — | 1 A | — | |
| OG0030067 | Golon.011G360200 | 1 | — | — | 2 A | — | |
| OG0030069 | Golon.011G362500 | 1 | — | — | 1 A | 1 A | |
| OG0053445 | Golon.011G359800 | 1 | — | — | — | — | |
| OG0053446 | Golon.011G360000 | 1 | — | — | — | — | |
| OG0053448 | Golon.011G360600 | 1 | — | — | — | — | |
| OG0053451 | Golon.011G361700 | 1 | — | — | — | — | |
| OG0053452 | Golon.011G361800 | 1 | — | — | — | — | |
| OG0053453 | Golon.011G362100 | 1 | — | — | — | — | |
| TMV resistance protein N-like isoform X1 | OG0053449 | Golon.011G360900 | 1 | — | — | — | — |
| TMV resistance protein N-like isoform X2 | OG0028874** | Golon.011G362300 | 4 | — | — | — | — |
| OG0033549 | Golon.011G363900 | 1 | — | — | — | 1 A |
*
This gene is syntenically conserved with G. arboreum in the COGE-GEVO analysis.
**
This orthogroup is split between two related, but separately named, annotations.