Table IV.
Gene sets enriched in phenotype high vs. low of AGAP2-AS1.
| MSigDB collection | Gene xet name | NES | NOM P-value | FDR q-value |
|---|---|---|---|---|
| h.all.v6.2.symbols.gmt | HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION_6 | 2.192 | 0.002 | 0.011 |
| HALLMARK_HYPOXIA | 1.688 | 0.038 | 0.115 | |
| HALLMARK_ANGIOGENESIS | 1.877 | 0.012 | 0.063 | |
| c2.cp.kegg.v6.2.symbols.gmt | KEGG_ECM_RECEPTOR_INTERACTION | 2.077 | <0.001 | 0.021 |
| KEGG_NOTCH_SIGNALING_PATHWAY | 1.760 | 0.043 | 0.116 | |
| KEGG_BASAL_CELL_CARCINOMA | 1.617 | 0.037 | 0.180 | |
| c2.cgp.v6.2.symbols.gmt | LINDGREN_BLADDER_CANCER_HIGH_RECURRENCE | 2.367 | <0.001 | 0.012 |
| JECHLINGER_EPITHELIAL_TO_MESENCHYMAL_TRANSITION_UP | 2.215 | <0.001 | 0.020 |
Gene sets with NOM P-value <0.05 and FDR q-value <0.25 were considered as significantly enriched. FDR, false discovery rate; NES, normalized enrichment score; NOM, normalized.