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. 2020 Apr 26;12(8):7431–7447. doi: 10.18632/aging.103090

Table 2. Gene ontology and KEGG pathway analysis of the enriched Sirt1 interacting proteins during the initiation phase of miPSCs production.

GO term Genes Fold enrichment p-value
GO:0051415~interphase microtubule nucleation by interphase microtubule organizing center Tubgcp4, Tubgcp5, Tubgcp3, Tubgcp2 574.0317 2.31E-08
GO:0007020~microtubule nucleation Tubgcp4, Tubgcp5, Tubgcp3, Tubgcp2 215.2619 6.42E-07
GO:0032508~DNA duplex unwinding Xrcc6, Rad50, Wrn, Mre11a 191.3439 9.34E-07
GO:0051298~centrosome duplication Tubgcp4, Tubgcp5, Tubgcp3, Tubgcp2 156.5541 1.76E-06
GO:0007126~meiotic nuclear division Tubgcp4, Tubgcp5, Tubgcp3, Tubgcp2 143.5079 2.31E-06
GO:0090307~mitotic spindle assembly Tubgcp4, Tubgcp5, Tubgcp3, Tubgcp2 98.40544 7.40E-06
GO:0031122~cytoplasmic microtubule organization Tubgcp4, Tubgcp5, Tubgcp3, Tubgcp2 95.67196 8.07E-06
GO:0006302~double-strand break repair Xrcc6, Rad50, Wrn, Mre11a 54.66969 4.40E-05
GO:0000226~microtubule cytoskeleton organization Tubgcp4, Tubgcp5, Tubgcp3, Tubgcp2 35.87698 1.55E-04
GO:0000723~telomere maintenance Xrcc6, Rad50, Wrn 67.97744 7.98E-04
GO:0006974~cellular response to DNA damage stimulus Xrcc6, Sirt1, Rad50, Wrn, Mre11a 10.25057 0.001035
GO:0006310~DNA recombination Xrcc6, Rad50, Wrn 30.38992 0.003927
GO:0031860~telomeric 3' overhang formation Rad50, Mre11a 430.5238 0.004417
GO:0006281~DNA repair Xrcc6, Rad50, Wrn, Mre11a 10.83079 0.00492
GO:0000731~DNA synthesis involved in DNA repair Sirt1, Wrn 215.2619 0.008816
GO:0032206~positive regulation of telomere maintenance Rad50, Mre11a 172.2095 0.011009
GO:0000722~telomere maintenance via recombination Rad50, Wrn 156.5541 0.012103
GO:0033674~positive regulation of kinase activity Rad50, Mre11a 143.5079 0.013196
GO:0031954~positive regulation of protein autophosphorylation Rad50, Mre11a 95.67196 0.019732
GO:0046597~negative regulation of viral entry into host cell Rad50, Mre11a 86.10476 0.021902
GO:0006303~double-strand break repair via nonhomologous end joining Xrcc6, Mre11a 82.00454 0.022985
GO:0043066~negative regulation of apoptotic process Sirt1, Mre11a, Ddx3x, Myo18a 6.085142 0.023396
GO:0071480~cellular response to gamma radiation Xrcc6, Wrn 71.75397 0.026227
GO:0010667~negative regulation of cardiac muscle cell apoptotic process Sirt1, Hspa8 66.23443 0.028383
GO:2001243~negative regulation of intrinsic apoptotic signaling pathway Ddx3x, Opa1 63.78131 0.029459
GO:0071479~cellular response to ionizing radiation Eef1d, Sirt1 55.55146 0.033753
GO:0006418~tRNA aminoacylation for protein translation Eprs, Vars 47.83598 0.039095
GO:0007346~regulation of mitotic cell cycle Sirt1, Rad50 46.54311 0.04016
GO:0051276~chromosome organization Rad50, Mre11a 45.3183 0.041223
KEGG Term Genes Fold Enrichment p-value
mmu03450: Non-homologous end-joining Mre11a, Rad50, Xrcc6 148.4615 1.43E-04
mmu03440: Homologous recombination Mre11a, Rad50 45.95238 0.039206