Skip to main content
. Author manuscript; available in PMC: 2020 May 7.
Published in final edited form as: Nanoscale. 2019 Nov 28;11(46):22515–22530. doi: 10.1039/c9nr06327g

Table 4.

Classifier metrics using nanoparticle trajectories to predict particle type (PS-COOH, PS-COOH in serum, PS-PEG, and PS-PEG in serum) in organotypic rat brain slice model. From left to right: (1) sample size of training and test datasets after spatial checkerboard split, (2) log median predictor using diffusion coefficients at τ = 100 ms averaged over 9 μm × 9 μm windows, (3) neural network predictor trained with principal components from trajectory feature analysis using both individual and locally averaged geometric features, (4) neural network trained with principal components from trajectory feature analysis limited to PS-COOH nanoparticles, (5) neural network trained with principal components from trajectory feature analysis limited to PS-PEG nanoparticles, (6) neural network trained with principal components from trajectory feature analysis limited to PS-COOH nanoparticles using leave-one-out cross-validation (average recall values reported)

Sample size
Median
predictora
Neural networka
Neural
networka,b
Neural
networka,b,c
Neural
networka,b,d
Training Test Training Test Training Test Training Test Training Test Training Test
PS-COOH 88 001 86 429 0.083 0.075 0.773 0.593 0.807 0.473 0.886 0.536
PS-COOH in serum 138 913 142 066 0.176 0.172 0.842 0.687 0.878 0.548 0.936 0.640
PS-PEG 35 969 36 864 0.142 0.171 0.438 0.283 0.517 0.065 0.658 0.258
PS-PEG in serum 95 111 93 907 0.029 0.023 0.879 0.800 0.878 0.641 0.967 0.908
Avg/tot 357 994 359 266 0.107 0.110 0.838 0.591 0.770 0.432 0.911 0.588 0.812 0.583
a

Predictions performed using locally averaged features.

b

Reported recall values are averaged from 4 separate 3–1 train-test split predictors.

c

Predictor limited to PS-COOH nanoparticles to predict serum status.

d

Predictor limited to PS-PEG nanoparticles to predict serum status.