Table 4.
Classifier metrics using nanoparticle trajectories to predict particle type (PS-COOH, PS-COOH in serum, PS-PEG, and PS-PEG in serum) in organotypic rat brain slice model. From left to right: (1) sample size of training and test datasets after spatial checkerboard split, (2) log median predictor using diffusion coefficients at τ = 100 ms averaged over 9 μm × 9 μm windows, (3) neural network predictor trained with principal components from trajectory feature analysis using both individual and locally averaged geometric features, (4) neural network trained with principal components from trajectory feature analysis limited to PS-COOH nanoparticles, (5) neural network trained with principal components from trajectory feature analysis limited to PS-PEG nanoparticles, (6) neural network trained with principal components from trajectory feature analysis limited to PS-COOH nanoparticles using leave-one-out cross-validation (average recall values reported)
Sample size |
Median predictora |
Neural networka |
Neural networka,b |
Neural networka,b,c |
Neural networka,b,d |
|||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Training | Test | Training | Test | Training | Test | Training | Test | Training | Test | Training | Test | |
PS-COOH | 88 001 | 86 429 | 0.083 | 0.075 | 0.773 | 0.593 | 0.807 | 0.473 | 0.886 | 0.536 | — | — |
PS-COOH in serum | 138 913 | 142 066 | 0.176 | 0.172 | 0.842 | 0.687 | 0.878 | 0.548 | 0.936 | 0.640 | — | — |
PS-PEG | 35 969 | 36 864 | 0.142 | 0.171 | 0.438 | 0.283 | 0.517 | 0.065 | — | — | 0.658 | 0.258 |
PS-PEG in serum | 95 111 | 93 907 | 0.029 | 0.023 | 0.879 | 0.800 | 0.878 | 0.641 | — | — | 0.967 | 0.908 |
Avg/tot | 357 994 | 359 266 | 0.107 | 0.110 | 0.838 | 0.591 | 0.770 | 0.432 | 0.911 | 0.588 | 0.812 | 0.583 |
Predictions performed using locally averaged features.
Reported recall values are averaged from 4 separate 3–1 train-test split predictors.
Predictor limited to PS-COOH nanoparticles to predict serum status.
Predictor limited to PS-PEG nanoparticles to predict serum status.