Table 1.
Overview of the Simulated Nucleosomes
Sequence | Origin | Oct4 Binding Sites | AT Content (%) | Simulation Time | Temperature of Dissociation | Elastic Distortion Energiesa (kcal/mol) |
---|---|---|---|---|---|---|
Widom | Artificial | 0 | 42.26 | 3 × 1 μs | 88.51 ± 1.60 | 322.93 |
Esrrb | Natural | 1 | 45.24 | 3 × 1 μs | 87.24 ± 1.49 | 364.92 |
Lin28b | Natural | >1 | 59.52 | 3 × 1 μs | 83.90 ± 1.08 | 366.53 |
Energies calculated from the average structure of the MD simulation ensembles.