Table 2.

BLAST search results of contigs harbouring plasmids against the AMR databases. HSP – high scoring segment pair.

Bacterial culture	PlasmidFinder			Resistance genes database
	Plasmid type	Query/HSP length, bp	Identity, %	CTX-M variant	Hit length, bp	Identity, %	E-value
E. coli (A2-39)	IncHI2	327/327	100	CTX-M-2	878	98.7	0
	IncI1	142/142	99.3
	p0111	885/885	98.9
K. pneumoniae (A2-37)	IncFII	231/230	98.3	CTX-M-14	877	99.5	0
	IncFIA	388/388	97.2
	IncFIB	512/560	98.2
E. coli (A2-39) +K. pneumoniae (A2-37)	IncHI2	630/630	99.2	CTX-M-2	877	99.3	0
	p0111	885/885	98.8
	IncFIA	388/388	96.9	CTX-M-14	876	100	0
	IncFIB	560/560	98.7
	IncFII	261/261	100