Table 1.
Features of the available collapsing tools, with our proposed tool BioSeqZip in the last row
Tool | SE | PE | Quality | Memory bound | File formats |
---|---|---|---|---|---|
FU | No | Yes | High | No | .fa.fq |
FXT | Yes | No | No | No | .fa |
PDR | Yes | Yes | High-AVG | No | .fa.fq |
SC | Yes | No | AVG | No | .fa.fq |
SD | Yes | Yes | High-sum | No | .fa.fq |
BSZ | Yes | Yes | AVG | Yes | .fa.fq.sam.bam.tag.tagq |