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. 2020 Jan 30;36(9):2705–2711. doi: 10.1093/bioinformatics/btaa051

Table 1.

Features of the available collapsing tools, with our proposed tool BioSeqZip in the last row

Tool SE PE Quality Memory bound File formats
FU No Yes High No .fa.fq
FXT Yes No No No .fa
PDR Yes Yes High-AVG No .fa.fq
SC Yes No AVG No .fa.fq
SD Yes Yes High-sum No .fa.fq
BSZ Yes Yes AVG Yes .fa.fq.sam.bam.tag.tagq