Table 2.

Classification and total number of variants (SNVs + INDELs) in each vQTL region

Region	OCU3	OCU7	OCU10	OCU14	Total
Upstream	141	21	34	328	524
5′UTR	2	0	5	0	7
Synonymous	9	2	10	34	55
Missense	1	0	6	28	35
Frameshift	0	0	0	4	4
Splicing	4	0	1	9	14
Intron	2019	267	1622	3145	7053
3′UTR	28	0	3	39	70
Downstream	193	34	57	486	770
Intergenic	3961	112	2237	3887	10,197
Total					18,729