Table 1. Candidate SNPs in qem2 Annotated in Genes.

Chr	Pos	R	M	N	AF	Sh	Region	Gene ID	Type	AR	AM	Name
5	16,021,261	C	T	60	0.87	40	CDS	At5g40010	non-synonymous	G	S	ASD
5	17,457,889	C	T	38	1	40	CDS	At5g43450	non-synonymous	D	N	—
5	18,031,708	G	A	27	1	40	CDS	At5g44690	non-synonymous	R	STOP	—
5	18,089,069	G	A	52	1	40	CDS	At5g44800	non-synonymous	A	V	CHR4
5	19,281,739	G	A	40	0.93	40	CDS	At5g47530	non-synonymous	G	E	—
5	19,572,635	G	A	17	0.94	32	3′UTR	At5g48300	—	—	—	ADG1
5	19,637,792	G	A	43	0.96	40	CDS	At5g48460	non-synonymous	A	V	ATFIM2
5	20,946,101	G	A	49	0.83	40	CDS	At5g51560	non-synonymous	G	S	—

AF, allele frequency; AM, amino acid inqem2; AR, amino acid in the reference genome (svp flc ft tsf soc1); CDS, coding sequence; Chr, chromosome; Gen ID, gene identifier; M, nucleotide in qem2; N, number of reads supporting the mutation; Pos, position of the mutated nucleotide; R, nucleotide in the reference genome (svp flc ft tsf soc1); Region, region of the locus where the mutation was identified; Score (maximum 40); Sh, SHORE Score (maximum 40); Type, type of mutation (non-synonymous or synonymous); Dashes indicate no gene name.