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. 2020 May 7;21:344. doi: 10.1186/s12864-020-6742-6

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© The Author(s). 2020

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 6 — Regional plots of VRTN mutation and rs692640845 at 97.48–97.69 Mb on SSC7 for teat number in Canadian Duroc pigs. For a-c, the -log10(P-values) of SNPs (y-axis) are presented according to their chromosomal position (x-axis). The peak SNP of GWAS is denoted by large blue triangles. The VRTN mutation is denoted by green dot. Other SNPs are represented by colored rhombi according to the target SNP with which they were in strongest LD. The plots of a and b shows the association results for teat number before and after conditional analysis on VRTN mutation. The plots of a and c shows the association results for teat number before and after conditional analysis on rs692640845. d represents the 84 kb LD block in the significant region on SSC7 (97.48–97.69 Mb). The complete red boxes with no numbers indicated that SNP pairs have complete linkage disequilibrium