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. 2020 Feb 11;6(1):veaa004. doi: 10.1093/ve/veaa004

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© The Author(s) 2020. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 2. — Maximum-likelihood reconstruction of the A1/D recombinants using IQ-TREE and their SCUEAL subtype (right). One triplet (Rec-105 to Rec-107), and a few cherries can be seen (e.g. Rec-153 and Rec-154). Some examples of convergent recombination patterns include Rec-116 and Rec-147, Rec-8 and Rec-160, Rec-29 and Rec-158.