TABLE 2.
The assembled size of the eight Lepidium linkage groups (LGs) in megabase pair and the homeology, sequence identity, and length of their sequences corresponding to A. thaliana chromosome (Atx) sequences.
| Sequence | Max | Total | Query coverage | Identity | Number of | LMSLc | |||
| LG | %G + C | size (Mbp) | Atx | score | score | (%) | (%) | matches | (in kbp) |
| LG-1 | 35.4 | 18.85 | 1 | 5,381 | 4,499,000 | 21 | 92 | 14,565 | 3.8 |
| 2 | 2,618 | 473,900 | 2 | 84 | 2,961 | ||||
| 3 | 2,458 | 598,600 | 2 | 83 | 3,744 | ||||
| 4 | 2,356 | 389,500 | 2 | 81 | 2,874 | ||||
| 5 | 1,936 | 492,600 | 2 | 79 | 3,599 | ||||
| Total/mean | – | – | 29a | 83.8b | – | ||||
| LG-2 | 35.4 | 10.07 | 1 | 4,082 | 2,458,000 | 14 | 84 | 8,478 | 3.8 |
| 5 | 1,920 | 490,100 | 3 | 78 | 2,779 | ||||
| 2 | 2,849 | 211,100 | 2 | 87 | 1,286 | ||||
| 3 | 3,442 | 301,800 | 2 | 84 | 1,726 | ||||
| 4 | 1,999 | 280,900 | 2 | 79 | 1,662 | ||||
| Total/mean | – | – | 23a | 82.4b | – | ||||
| LG-3 | 35.9 | 13.11 | 3 | 19,392 | 3,793,000 | 26 | 91 | 7,917 | 13.8 |
| 2 | 11,250 | 1,517,000 | 11 | 88 | 4,198 | ||||
| 5 | 4,247 | 800,500 | 6 | 80 | 4,186 | ||||
| 4 | 3,255 | 482,800 | 4 | 80 | 2,689 | ||||
| 1 | 4,816 | 600,600 | 4 | 86 | 4,080 | ||||
| Total/mean | – | – | 51a | 85.0b | – | ||||
| LG-4 | 34.9 | 9.44 | 2 | 6,945 | 2,308,000 | 25 | 84 | 6,793 | 5.6 |
| 1 | 2,572 | 829,000 | 5 | 82 | 4,538 | ||||
| 3 | 2,444 | 566,700 | 4 | 77 | 3,288 | ||||
| 5 | 7,954 | 473,800 | 4 | 91 | 2,836 | ||||
| 4 | 2,375 | 319,900 | 3 | 80 | 1,913 | ||||
| Total/mean | – | – | 41a | 82.8b | – | ||||
| LG-5 | 35.6 | 15.22 | 3 | 15,324 | 4,570,000 | 25 | 85 | 9,820 | 13.8 |
| 2 | 6,082 | 916,900 | 6 | 81 | 3,732 | ||||
| 5 | 4,228 | 919,400 | 5 | 83 | 4,839 | ||||
| 1 | 4,452 | 699,800 | 3 | 84 | 4,589 | ||||
| 4 | 5,039 | 359,900 | 2 | 85 | 2,409 | ||||
| Total/mean | – | – | 41a | 83.6b | – | ||||
| LG-6 | 35.5 | 18.66 | 4 | 12,103 | 2,441,000 | 10 | 84 | 7,171 | 11.1 |
| 5 | 5,649 | 1,919,000 | 9 | 84 | 6,572 | 6.7 | |||
| 1 | 2,967 | 747,700 | 3 | 85 | 5,007 | ||||
| 2 | 1,996 | 346,000 | 2 | 79 | 2,458 | ||||
| 3 | 2,379 | 560,400 | 2 | 74 | 3,633 | ||||
| Total/mean | – | – | 26a | 81.2b | – | ||||
| LG-7 | 35.8 | 20.38 | 4 | 14,077 | 4,092,000 | 18 | 82 | 10,561 | 14.1 |
| 5 | 3,141 | 1,408,000 | 5 | 79 | 6,558 | ||||
| 1 | 2,562 | 821,000 | 3 | 81 | 5,335 | ||||
| 2 | 3,162 | 599,300 | 3 | 79 | 3,256 | ||||
| 3 | 4,124 | 633,700 | 2 | 82 | 3,874 | ||||
| Total/mean | – | – | 31a | 80.6b | – | ||||
| LG-8 | 35.4 | 14.85 | 5 | 12,510 | 6,087,000 | 39 | 82 | 11,383 | 12.8 |
| 3 | 3,926 | 832,100 | 6 | 85 | 4,343 | ||||
| 1 | 3,927 | 609,800 | 3 | 78 | 4,232 | ||||
| 2 | 2,825 | 369,400 | 2 | 86 | 2,538 | ||||
| 4 | 6,042 | 366,900 | 2 | 86 | 2,445 | ||||
| Total/mean | – | – | 52a | 83.4b | – |
The eight linkage groups comprise 10,302 contigs/scaffolds with a total sequence length of 120.59 Mbp. The accession numbers and sequence size (bp) of A. thaliana chromosomes used in this analysis, respectively, are as follows: chromosome_1 (NC_003070.9, 30427671), chromosome_2 (NC_003071.7, 19698289), chromosome_3 (NC_003074.8, 23459830), chromosome_4 (NC_003075.7, 18585056), and chromosome_5 (NC_003076.8, 26975502). The mean G + C content of the LGs is 35.5%; the overall mean sequence identity of the LGs with At chromosomes was 82.9%; E-values of all hits are 0.0.
aTotal.
bMean.
cLMSL, longest aligned sequence length between the corresponding LGs and Atxs.