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. 2020 May 4;8:e9085. doi: 10.7717/peerj.9085

Table 1. SSRseq development strategy and DNA characteristics of species used in this study.

Kingdom Class Species SSRseq development strategy Number of DNA extracted individuals DNA extraction protocol DNA quality Reference
Animalia Actinopterygii Salmo salar Previously developed loci 1,152 Salt-chloroform (Gauthey et al., 2015) High Bacles et al. (2018) and Lepais et al. (2017)
Plantae Eudicots Quercus faginea, Q.canariensis Re-designed primers around already developed loci using reference genome sequence of closely related species 380 Invisorb DNA Plant HTS 96 kit High This study
Animalia Actinopterygii Alosa alosa, A.fallax De novo loci development based on available repeat-enriched library sequencing 382 Invitrogen PureLink Genomic DNA Mini kit Highly degraded Taillebois et al. (2020)
Fungi Agaricomycetes Armillaria ostoyae De novo loci development based on reference genome sequence 384 CTAB (Prospero, Lung-Escarmant & Dutech, 2008) Heterogeneous This study
Animalia Insecta Melipona variegatipes De novo loci development based on newly generated low coverage whole genome shotgun sequencing 91 Qiagen DNeasy 96 Blood & Tissue Kit High This study