Table 4.
Summary of the small molecules and biologics listed in this review.
|
Section |
Target |
Method |
Cmpd ID |
Potency |
Potency measure |
Selectivity targets measured |
Protein Cmpd Structure |
PAINs? |
---|---|---|---|---|---|---|---|---|---|
Small molecules | |||||||||
Ras |
4.1 |
Ras |
A |
1 |
IC50 0.5 μm |
Competition assay |
0 |
No |
No |
|
4.1 |
Ras |
A |
2 |
IC50 0.7 μm |
Competition assay |
0 |
NMR |
No |
|
4.1 |
Ras |
A |
3 |
IC50 90 μm |
Fluorescence |
0 |
No |
No |
|
4.1 |
KRas |
A |
4 |
IC50 342 μm |
Fluorescence |
2 |
X‐Ray |
No |
|
4.1 |
KRas |
A |
5 |
K D 190 μm |
NMR |
0 |
X‐Ray |
No |
|
4.1 |
Rheb KRas |
A |
6 |
K D 1800 μm K D 600 μm |
NMR |
1 |
NMR |
No |
|
4.1 |
KRas |
A |
7 |
K D 5.8 mm |
NMR |
0 |
NMR |
No |
|
4.1 |
Ras |
A |
8 |
GI50 4‐7 μm |
Cell phenotype |
0 |
Docking |
No |
|
4.1 |
KRas G12C |
A |
9 |
IC50 1.6 μm |
Cellular target engagement |
Proteome |
X‐Ray |
No |
|
4.1 |
KRas G12C |
A |
10** |
IC50 120 nm |
Cellular target engagement |
Proteome |
X‐Ray |
No |
|
4.1 |
RalA,‐B |
A |
11 |
n.d. |
ELISA/cell phenotype |
0 |
Docking |
No |
|
4.1 |
RalA,‐B |
A |
12 |
IC50 ≈3.5 μm |
Cell phenotype |
0 |
NMR |
No |
|
4.1 |
RalA,‐B |
A |
13 |
K D 4.7 μm K D 7.7 μm |
SPR ITC |
2 |
NMR |
No |
|
4.3 |
Sos |
B |
14 |
K D 7 μm |
MST |
1 |
Docking |
Yes |
|
4.3 |
Sos |
B |
15 |
IC50 5 μm |
Fluorescence |
1 |
Docking |
No |
|
4.3 |
Sos |
B |
16 |
IC50 32 μm |
Fluorescence |
1 |
Docking |
No |
|
4.3 |
Epac1 |
B |
17 |
IC50 71 μm |
Cell phenotype |
2 |
Docking |
Yes |
|
4.3 |
Epac1 |
B |
18 |
IC50 4 μm |
Cell phenotype |
2 |
Docking |
Yes |
|
4.3 |
Kras/Sos1 |
B |
19 |
n.d[b] |
SPR |
0 |
Xray |
No |
|
4.3 |
Sos1 |
B |
20 |
K D 450 nm IC50 320 nm |
ITC Fluorescence |
>100 |
Xray |
No |
|
4.3 |
Sos1 |
B |
21* |
IC50 21 nm |
Fluorescence |
5 |
XRay |
No |
|
4.4 |
Epac |
C |
22 |
IC50 8.4 μm |
Fluorescence |
2 |
No |
No |
|
4.4 |
Epac |
C |
23 |
IC50 4 μm |
Fluorescence |
2 |
No |
No |
|
4.4 |
Epac |
C |
24 |
IC50 5.9 μm |
Fluorescence |
2 |
Docking |
No |
|
4.4 |
Epac2 |
C |
25 |
IC50 0.4 μm |
Fluorescence |
2 |
No |
No |
|
4.4 |
Epac1 Epac2 |
C |
26 |
IC50 11 μm IC50 2.4 μm |
Fluorescence |
2 |
Docking |
Yes |
|
4.4 |
Epac1 |
C |
27 |
IC50 23 μm |
Fluorescence |
2 |
No |
No |
|
4.5 |
KRas/Sos |
D |
28–31 |
n.d[a] |
n/a |
0 |
X‐Ray |
No |
|
4.5 |
Ras/Sos |
D |
32 |
EC50 14 μm |
Fluorescence |
0 |
X‐Ray |
No |
|
4.5 |
Ras/Sos |
D |
33 |
EC50 9 μm |
Fluorescence |
0 |
X‐Ray |
No |
|
4.6 |
p21ras |
E |
34 |
n.d.[b] |
Fluorescence |
2 |
No |
No |
|
4.6 |
KRas |
E |
35 |
K D ≈0.8 μm |
SPR |
5 |
No |
No |
|
4.6 |
Ras |
E |
36 |
IC50 20 μm |
Fluorescence |
7 |
NMR |
Yes |
|
4.6 |
Ras |
E |
37 |
IC50 100 μm |
Fluorescence |
7 |
NMR |
Yes |
|
|
|
|
|
|
|
|
|
|
Rho |
5.1 |
Rac1 |
A |
38 |
IC50 ≈50 μm |
Pull‐down assay |
6 |
X‐Ray |
No |
|
5.1 |
Rac1 |
A |
39 |
IC50 12 μm |
G‐LISA[c] |
2 |
Docking |
Similar to aggregators |
|
5.1 |
Rac1 |
A |
40 |
IC50 61 μm |
Cell phenotype |
1 |
Docking
|
No |
|
5.1 |
Rac1 |
A |
41 |
IC50 4 μm |
Cell phenotype |
1 |
Docking |
No |
|
5.1 |
Rac1 |
A |
42 |
IC50 2.5 μm |
G‐LISA[c] |
1 |
Docking |
No |
|
5.1 |
Rac1/3 |
A |
43 |
IC50 1.1 μm |
G‐LISA[c] |
3 |
Docking |
No |
|
5.1 |
Rac1 Cdc42 |
A |
44 |
IC50 103 nm IC50 78 nm |
G‐LISA[c] |
2 |
Docking |
No |
|
5.1 |
Rac1 Cdc42 |
A |
45 |
n.d[b] |
G‐LISA[c] |
2 |
No |
No |
|
5.1 |
Cdc42 |
A |
46 |
n.d[b] |
G‐LISA[c] Fluorescence |
2 |
No |
No |
|
5.1 |
Cdc42 |
A |
47 |
K D 6.4 μm K D 11.4 μm |
Fluorescence SPR |
2 |
Docking |
No |
|
5.1 |
RhoA (RhoB,C) |
A |
48 |
K D 354 nm |
MST |
5 |
Docking |
No |
|
5.2 |
Trio |
B |
49 |
IC50 116 μm |
Fluorescence |
2 |
No |
Toxic |
|
5.2 |
Trio |
B |
50 |
IC50 51 μm |
Fluorescence |
2 |
No |
(May be toxic) |
|
5.2 |
Trio |
B |
51 |
IC50 56 μm |
Fluorescence |
2 |
No |
(May be toxic) |
|
5.2 |
Trio |
B |
52 |
IC50 76 μm |
Fluorescence |
3 |
No |
Yes |
|
5.2 |
LARG |
B |
53 |
K D 76 nm |
MST |
5 |
Docking |
Yes |
|
5.2 |
DOCK2 DOCK1/5 |
B |
54 |
IC50 23 μm |
Fluorescence |
5 |
No |
Yes |
|
5.2 |
DOCK5 DOCK1/2 |
B |
55 |
n.d.[b] |
G‐LISA Fluorescence |
3 |
No |
No |
|
5.3 |
RhoGDI1/Cdc42 |
G |
56 |
IC50 ≈12 μm |
Cell phenotype |
0 |
No |
No |
|
5.4 |
MgcRac GAP/ Rac1 |
H |
57 |
IC50 15 μm |
Colorimetric |
2 |
No |
No |
|
|
|
|
|
|
|
|
|
|
Arf |
6.1 |
Arf1/ARF6 |
A |
58 |
IC50 1 μm [d] IC50 3.4 μm [d] |
Fluorescence Radiometric |
8 |
Docking |
No |
|
6.2 |
Arf1 or Arf5/BFA‐ sensitive GEF |
D |
59 |
K iapp ≈12 μm |
Fluorescence |
>10 |
XRay |
No |
|
6.2 |
Arf1‐GDP/ARNO |
D |
60 |
K iapp 50 μm |
Fluorescence |
7 |
NMR |
No |
|
6.2 |
Arf/ ArfGEF |
D |
61 |
GI50 12 nm EC50 27 nm |
Cell phenotype |
7 |
MD |
No |
|
6.3 |
Cyto‐hesins |
B |
62 |
IC50 2.4–5.6 μm [d] |
Fluorescence |
>10 |
No |
No |
|
6.3 |
Cyto‐hesins |
B |
63 |
IC50 3.1 μm |
Fluorescence |
1 |
No |
No |
|
6.3 |
Cyto‐hesins |
B |
64 |
IC50 440 nm |
Fluorescence |
0 |
No |
Similarity to aggregators |
|
6.3 |
GBF1 |
B |
65 |
IC50 3.3 μm |
Cell phenotype |
1 |
No |
Yes |
|
6.3 |
GBF1 |
B |
66 |
IC50 3.4 μm |
Cell phenotype |
1 |
No |
No |
|
6.3 |
GBF1 |
B |
67 |
n.d |
Cell phenotype |
2 |
Docking |
Yes |
|
6.3 |
GBF1 |
B |
68 |
n.d |
Cell phenotype |
2 |
Docking |
Yes |
|
6.3 |
ARNO |
B |
69 |
K iapp 3.7 mm |
Fluorescence |
0 |
X‐Ray |
No |
|
6.3 |
ARNO |
B |
70 |
K iapp 1.6 mm |
Fluorescence |
0 |
X‐Ray |
No |
|
6.4 |
ARFGAP |
I |
71 |
K D 670 nm |
SPR |
14 |
No |
No |
|
|
|
|
|
|
|
|
|
|
Biologics | |||||||||
|
4.2 |
Ras |
A |
HBS3 |
KD 28 μm |
Fluorescence polarization |
0 |
NMR
|
No |
|
4.2 |
Ras |
A |
SAH‐SOS1 A |
EC50 100–175 nm |
Fluorescence polarization |
0 |
NMR
|
No |
|
4.2 |
KRas‐G12D |
A |
KRpep‐2 d |
1.6 nm |
FRET |
2 |
X‐Ray |
No |
|
4.7 |
Ras |
J |
NF1‐S |
IC50 87 μm |
Radiolabeled competition |
0 |
No |
No |
|
6.3 |
Small ArfGEFs |
B |
M69 |
KD 16 nm |
Filter binding assay |
2 |
No |
No |
[a] Potency not determined as covalent compounds. [b] Assays conducted but specific potency (IC50, K D, K iapp) not stated. [c] Cell‐based activation assay for small GTPases. [d] IC50 could not be replicated in separate study due to poor solubility. * Suitable for use as a probe in vitro. ** Suitable for use as a probe in vitro and in vivo. Probe criteria: IC50 or K D <100 nm, >30‐fold selectivity against sequence‐related proteins of the same target family, profiled against relevant off‐targets and on‐target effects in cells at <1 μm concentration.