Table 7:
SNVs with cSKAT Weight > 40%
Chr | bp | Gene | Major/Minor | MAF | wcSKAT † | OC ‡ | TF | HM | |||
---|---|---|---|---|---|---|---|---|---|---|---|
CEBP-β | FOXA2 | HNF4α | P300 | H3K9Ac | |||||||
2 | 11506578 | ROCK2 | T/C | 0.0017 | 0.48 | 360 | 968 | 752 | 959 | 1000 | 128 |
2 | 11506743 | C/A | 0.0022 | ||||||||
4 | 818583 | CPLX1 | T/A | 0.0017 | 0.41 | 229 | 0 | 0 | 0 | 0 | 922 |
wcSKAT = estimated weight for SNV (0 ≤ w ≤ 1). Proportion of total SNV weight in the gene attributable to the SNV. The two SNVs in ROCK2 have identical weights because they have the same TF annotation value, and TF had 100% weight in ROCK2 (i.e. wcSKAT = TF value)
Annotations range from 0 (no signal) to 1000 (max signal)