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. Author manuscript; available in PMC: 2021 Jun 1.
Published in final edited form as: Genet Epidemiol. 2020 Feb 26;44(4):352–367. doi: 10.1002/gepi.22287

Table 7:

SNVs with cSKAT Weight > 40%

Chr bp Gene Major/Minor MAF wcSKAT OC TF HM
CEBP-β FOXA2 HNF4α P300 H3K9Ac
2 11506578 ROCK2 T/C 0.0017 0.48 360 968 752 959 1000 128
2 11506743 C/A 0.0022
4 818583 CPLX1 T/A 0.0017 0.41 229 0 0 0 0 922

wcSKAT = estimated weight for SNV (0 ≤ w ≤ 1). Proportion of total SNV weight in the gene attributable to the SNV. The two SNVs in ROCK2 have identical weights because they have the same TF annotation value, and TF had 100% weight in ROCK2 (i.e. wcSKAT = TF value)

Annotations range from 0 (no signal) to 1000 (max signal)