Table 2.
Cell-Cycle Codon Score (CCCS) of human RNA viruses.
| Groups | Gene isoform or viruses | PCA components |
CCCS | |
|---|---|---|---|---|
| PC1 (x) | PC2 (y) | |||
| +ssRNA | Rubella virus | -1.11152 | -2.38693 | -0.041109 |
| Hepatitis G virus | -0.20805 | -1.33632 | -0.012674 | |
| Hepatitis C virus | -0.38012 | -0.8688 | -0.015136 | |
| Hepatitis E virus | 0.05314 | -1.99911 | -0.006142 | |
| Ross river virus | 0.08755 | -1.48581 | -0.011565 | |
| Chikungunya virus | 0.2134 | -1.65931 | -0.008180 | |
| Sindbis virus | 0.25123 | -1.94371 | -0.009176 | |
| Eastern equine encephalitis virus | 0.48833 | -1.3069 | -0.002974 | |
| Western equine encephalitis virus | 0.47744 | -1.79137 | -0.003173 | |
| Venezuelan equine encephalitis virus | 0.42568 | -1.26628 | -0.003554 | |
| O'nyong nyong virus | 0.56417 | -1.63171 | -0.001119 | |
| Enterovirus 71 | 0.64889 | -0.88714 | -0.000267 | |
| Human coxsackievirus A9 | 0.54435 | -0.52889 | -0.002991 | |
| Human coxsackievirus B4 | 0.65238 | -0.59692 | -0.000998 | |
| Echoviruses | 0.57004 | -0.57533 | -0.002082 | |
| Polioviruses | 0.76484 | -0.35123 | 0.001193 | |
| Norwalk virus | 0.77184 | -0.52468 | 0.001137 | |
| Sapporo virus | 0.62754 | -0.94239 | 0.004792 | |
| Dengue virus type 1 | 0.91914 | -0.19005 | 0.005112 | |
| Dengue virus type 2 | 0.85638 | 0.19119 | 0.005403 | |
| Dengue virus type 3 | 0.88466 | -0.24134 | 0.004578 | |
| Dengue virus type 4 | 0.80321 | -0.02901 | 0.003912 | |
| Japanese encephalitis virus | 0.34886 | -0.42656 | -0.003955 | |
| Murray Valley encephalitis virus | 0.76079 | -0.71468 | 0.002322 | |
| St.Louis encephalitis virus | 0.61121 | -0.16698 | 0.000160 | |
| West Nile virus | 0.42713 | -0.4084 | -0.003391 | |
| Yellow fever virus | 0.55894 | -0.03048 | -0.000690 | |
| Zika virus | 0.46368 | 0.0873 | -0.002752 | |
| Kyasanur Forest disease virus | 0.26948 | -0.2271 | -0.006086 | |
| Omsk hemorrhagic fever virus | 0.2543 | -0.25169 | -0.005482 | |
| Tick-borne encephalitis virus | 0.15574 | -0.30465 | -0.007427 | |
| SARS coronavirus | 1.38814 | -1.47854 | 0.027135 | |
| MERS coronavirus | 1.4049 | -1.39321 | 0.031220 | |
| Human astrovirus | 1.21324 | -1.04323 | 0.014968 | |
| Rhinovirus A,B and C | 1.46621 | -0.28559 | 0.013209 | |
| Human parechovirus | 1.48761 | -0.44531 | 0.013904 | |
| Enterovirus 68 | 1.50423 | -0.49488 | 0.013644 | |
| Hepatitis A virus | 1.96492 | -0.10146 | 0.022827 | |
| Human coronaviruses | 1.83078 | -1.03063 | 0.024501 | |
| -ssRNA | Borna virus | 0.27188 | -1.00708 | -0.002858 |
| Rabies virus | 0.76128 | -0.25367 | 0.000205 | |
| Mokola virus | 0.79901 | -0.1188 | 0.001436 | |
| Measles virus | 0.58253 | -0.23633 | 0.000810 | |
| Vesicular stomatitis virus | 1.10766 | -0.23715 | 0.006431 | |
| Influenza A virus H3N2 | 0.98353 | -0.58886 | 0.008199 | |
| Marburg virus | 1.29734 | -0.55782 | 0.000675 | |
| Ebola viruses | 1.0992 | -0.67494 | 0.008390 | |
| Influenza B virus | 1.28533 | -0.26627 | 0.014146 | |
| Human parainfluenza virus type 1 | 1.09898 | -0.58691 | 0.015018 | |
| Human parainfluenza virus type 3 | 1.48386 | -0.16452 | 0.020038 | |
| Human parainfluenza virus type 2 | 1.25962 | -0.71004 | 0.016267 | |
| Mumps virus | 0.97594 | -1.15319 | 0.009273 | |
| Nipah virus | 1.21851 | -0.10109 | 0.011326 | |
| Hendra virus | 1.06209 | -0.09805 | 0.009457 | |
| Respiratory syncytial virus | 1.4689 | 0.17766 | 0.020368 | |
| Metapneumovirus | 1.35819 | -0.42703 | 0.016291 | |
| Influenza C virus | 1.72634 | -0.54316 | 0.021730 | |
| dsRNA | Colorado tick fever virus | 1.29334 | -1.66493 | -0.005517 |
| Mammalian orthoreovirus | 1.05591 | -1.47831 | 0.006214 | |
| Human picobirnavirus | 0.95531 | -1.1807 | 0.003846 | |
| Rotaviruses | 2.2321 | -1.29556 | 0.028856 | |
| Retro | HTLV-1 | 0.25781 | -0.96125 | -0.006770 |
| HTLV-2 | 0.11613 | 0.15063 | -0.007187 | |
| HIV-1 | 1.41668 | -0.26596 | 0.008663 | |
| HIV-2 | 0.94712 | -0.34939 | 0.007142 | |
| Ambi | Sin nombre virus | 0.25123 | -1.94371 | 0.017737 |
| Lymphocytic choriomeningitis virus | 0.77488 | 0.08308 | 0.006150 | |
| Lassa virus | 0.78719 | 0.24056 | 0.007772 | |
| Machupo virus | 0.90932 | 0.37322 | 0.008089 | |
| Rift valley fever virus | 0.81849 | -0.15444 | 0.003661 | |
| Junin virus | 0.96106 | -0.12456 | 0.009001 | |
| Guanarito virus | 1.0937 | -0.71405 | 0.009082 | |
| La Crosse virus | 1.19379 | -0.84942 | 0.007769 | |
| Crimean-Congo virus | 1.05851 | -0.551 | 0.006304 | |
| Bunyamwera virus | 1.39643 | -0.85192 | 0.018548 | |
| Hantaan virus | 1.47251 | -0.11594 | 0.015166 | |
| Seoul virus | 1.41416 | -0.37791 | 0.015762 | |