Figure S1.

Benchmarking of Viral-Track on Diverse Infection Models, Related to Figure 1

A. Graph chart representing the different steps of the Viral-Track pipeline. B-D. Results of Viral-Track analysis performed on LCMV spleen, LCMV lymph node and VSV lymph node datasets, respectively. Viral segments with more than 50 mapped reads are plotted. (E). Number of detected LCMV (left panel) and VSV (right panel) reads in the different samples from the lymph node experiment. F. Results of Viral-Track analysis performed on the in-vitro HSV-1 data. G. Quantification of the number of HSV-1 reads in HSV-1 infected and control samples. (H). Results of Viral-Track analysis performed on the in-vitro HIV data. I. Quantification of the number of HIV reads in HIV infected and control samples. J. UMAP plot of the liver HBV data, dots are colored by cell subset assignment based on Louvain clustering. K. UMAP plot of the liver HBV data. infected cells are colored in orange and bystander cells in gray.