Figure S4.

Viral-Track Performance on COVID-19 BAL Samples, Related to Figure 4

A. Results of Viral-Track analysis performed on samples with highest viral load (patients S2 and S3). B. Mean normalized expression of ACE2, TMPRSS2 and BSG across the 27 cell subsets C. Log₂ fold change between vUMI⁺ and vUMI^- SPP1⁺ monocyte-derived macrophages in patient S2 (x axis) and patient S3 (y axis). D. Relation between total human and viral UMIs in cells from patient S1. E. Projection of cells from patient S1, co-infected with hMPV, on the metacell map from Figure 3A. F. Enrichment analysis of the downregulated genes in hMPV infected monocytes. G. Number of hMPV UMIs in cells producing type I IFN or not. P value was computed by fitting a logistic regression predicting if a cell would produce type I IFN using total host and viral UMIs.