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. 2020 May 7;10:7720. doi: 10.1038/s41598-020-63912-w

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Identification of rearrangements events within the Terminal Inverted Repeats. The TIR sequences of the 11 strains were compared and visualized using the progressive Mauve algorithm for Windows. The alignment was performed on collinear sequences in which S1A1-7 TIR was used as reference sequence. Boxes with identical colors represent local collinear blocks (LCBs), indicating homologous DNA regions shared by two or more chromosomes without sequence rearrangements. Lines are drawn between LCBs in two adjacent species to indicate homologous regions. The placement of a block below the axis indicates an inversion event. Examples of rearrangement events occurring in the TIRs are highlighted by red circles; (A) Translocation event, (B) inversion event, (C) indel event.