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. 2020 May 8;19:86. doi: 10.1186/s12944-020-01257-z

Table 1.

Genome-wide association studies and detailed information of single nucleotide polymorphisms used as instrumental variable in the Mendelian randomization analyses of lifestyle factors in relation to cardiovascular diseases

Traits SNP Ethnics Chr Position Nearest gene EA EAF BETA SE Sample size P value Study Reference Journal
Sedentary behaviours rs26579 Europeans 5 87,985,295 MEF2C-AS2 G 0.415 0.028 0.005 91,105 2.60 × 10− 09 UK Biobank Aiden Doherty et al.,201828 Nat Commun
Sedentary behaviours rs25966 Europeans 5 106,822,908 EFNA5 G 0.531 0.028 0.005 91,105 3.00 × 10− 09 UK Biobank Aiden Doherty et al.,201828 Nat Commun
Sedentary behaviours rs6801032 Europeans 3 68,527,135 LOC105377146 A 0.259 0.031 0.005 91,105 3.10 × 10−09 UK Biobank Aiden Doherty et al.,201828 Nat Commun
Sedentary behaviours rs7779206 Europeans 7 71,723,883 CALN1 A 0.558 0.028 0.005 91,105 4.20 × 10−09 UK Biobank Aiden Doherty et al.,201828 Nat Commun
MVPA rs429358 Europeans 19 45,411,941 APOE T 0.850 −0.019 0.003 377,234 7.30 × 10−11 UK Biobank Klimentidis YC et al.,201827 Int J Obes (Lond)
MVPA rs7804463 Europeans 7 133,447,651 EXOC4 T 0.530 0.013 0.002 377,234 4.10 × 10−10 UK Biobank Klimentidis YC et al.,201827 Int J Obes (Lond)
MVPA rs2854277 Europeans 6 32,628,084 HLA-DQB1 C 0.920 0.027 0.005 377,234 1.40 × 10−08 UK Biobank Klimentidis YC et al.,201827 Int J Obes (Lond)
MVPA rs1379183 Europeans 7 50,237,784 C7orf72/SPATA48 C 0.410 −0.012 0.002 377,234 1.70 × 10−08 UK Biobank Klimentidis YC et al.,201827 Int J Obes (Lond)
MVPA rs3094622 Europeans 6 30,327,952 RPP21 A 0.860 0.018 0.003 377,234 1.00 × 10−08 UK Biobank Klimentidis YC et al.,201827 Int J Obes (Lond)
MVPA rs149943 Europeans 6 28,002,388 ZNF165 G 0.850 0.016 0.003 377,234 5.60 × 10−08 UK Biobank Klimentidis YC et al.,201827 Int J Obes (Lond)
MVPA rs2035562 Europeans 3 85,056,521 CADM2 A 0.330 −0.014 0.002 377,234 1.00 × 10−09 UK Biobank Klimentidis YC et al.,201827 Int J Obes (Lond)
MVPA rs7854466 Europeans 9 37,044,388 PAX5 T 0.560 −0.014 0.002 377,234 2.40 × 10−11 UK Biobank Klimentidis YC et al.,201827 Int J Obes (Lond)
MVPA rs1043595 Europeans 7 128,410,012 CALU G 0.720 0.013 0.002 377,234 4.20 × 10−08 UK Biobank Klimentidis YC et al.,201827 Int J Obes (Lond)
VPA rs1248860 Europeans 3 85,015,779 CADM2 G 0.480 −0.051 0.007 261,055 5.30 × 10−15 UK Biobank Klimentidis YC et al.,201827 Int J Obes (Lond)
VPA rs2764261 Europeans 6 108,927,842 FOXO3 A 0.370 0.030 0.005 261,055 5.30 × 10−08 UK Biobank Klimentidis YC et al.,201827 Int J Obes (Lond)
VPA rs13243553 Europeans 7 133,506,955 EXOC4 G 0.610 0.039 0.007 261,055 2.40 × 10−09 UK Biobank Klimentidis YC et al.,201827 Int J Obes (Lond)
VPA rs3781411 Europeans 10 126,715,436 CTBP2 C 0.880 0.058 0.009 261,055 1.00 × 10−10 UK Biobank Klimentidis YC et al.,201827 Int J Obes (Lond)
VPA rs328902 Europeans 7 35,020,843 DPY19L1 C 0.690 −0.041 0.006 261,055 1.30 × 10−10 UK Biobank Klimentidis YC et al.,201827 Int J Obes (Lond)
Sleep duration rs1191685 Europeans 2 113,811,454 PAX8 C 0.370 2.870 0.470 44,563 1.06 × 10−09 CHARGE Daniel J. Gottlieb et al,201529 Mol Psychiatry
Sleep duration rs1823125 Europeans 2 113,806,882 PAX8 G 0.260 3.010 0.500 45,281 1.71 × 10−08 CHARGE Daniel J. Gottlieb et al,201529 Mol Psychiatry
Sleep duration rs1807282 Europeans 2 113,826,506 PAX8 T 0.260 2.890 0.490 46,805 3.91 × 10−09 CHARGE Daniel J. Gottlieb et al,201529 Mol Psychiatry
Sleep duration rs1964463 Europeans 2 113,785,491 PAX8 G 0.250 2.840 0.500 45,281 1.07 × 10−08 CHARGE Daniel J. Gottlieb et al,201529 Mol Psychiatry
Sleep duration rs4587207 Europeans 6 30,874,924 IER3 G 0.800 −3.140 0.560 46,807 2.02 × 10−08 CHARGE Daniel J. Gottlieb et al,201529 Mol Psychiatry
Sleep duration rs4248149 Europeans 6 30,875,606 IER3 C 0.800 −3.080 0.560 46,810 3.95 × 10−08 CHARGE Daniel J. Gottlieb et al,201529 Mol Psychiatry
Sleep duration rs2394403 Europeans 6 30,875,848 IER3 T 0.800 −3.070 0.560 46,811 4.39 × 10−08 CHARGE Daniel J. Gottlieb et al,201529 Mol Psychiatry

SNP single nucleotide polymorphism; Chr chromosome; EA effect allele; EAF effect allele frequency; SE standard error; MVPA moderate-to-vigorous physical activity; VPA vigorous physical activity; CHARGE the Cohorts for Heart and Aging Research in Genomic Epidemiology