Table 1.
QTLs identified for pod and seed weights in nested‐association mapping (NAM) populations, NAM_Tifrunner (NAM‐T) and NAM_Florida‐07 (NAM‐F)
| QTL name | Chr | Year | Position (cM) | Left flanking marker | Right flanking marker | Marker interval (cM) | LOD | PVE (%) |
|---|---|---|---|---|---|---|---|---|
| QTLs identified in NAM‐T | ||||||||
| 100 Pod weight | ||||||||
| qPW_A05‐1 | A05 | 2015, 2016 | 62 | Affx‐152071156 | Affx‐152081918 | 3.4 | 9.4 | 32.6 |
| qPW_A05‐2 | A05 | 2015, 2016 | 18.1 | Affx‐152072578 | Affx‐152034828 | 1.2 | 9.8 | 33.3 |
| qPW_A05‐3 | A05 | 2015, 2016 | 25.3 | Affx‐152034514 | Affx‐152068537 | 2.1 | 12.1 | 30.4 |
| qPW_A06 | A06 | 2015 | 62.1 | Affx‐152028854 | Affx‐152042541 | 0.7 | 4.1 | 10.6 |
| qPW_B05 | B05 | 2015, 2016 | 53.2 | Affx‐152030151 | Affx‐152052489 | 0.6 | 8 | 34.3 |
| qPW_B06‐1 | B06 | 2015 | 86.2 | Affx‐152074118 | Affx‐152039395 | 5 | 3.8 | 22.1 |
| qPW_B06‐2 | B06 | 2015 | 56.3 | Affx‐152063867 | Affx‐152068866 | 6.2 | 6.1 | 16 |
| qPW_B07 | B07 | 2016 | 23.2 | Affx‐152075138 | Affx‐152061032 | 0.8 | 3.6 | 16.3 |
| 100 Seed weight | ||||||||
| qSW_A05‐1 | A05 | 2015, 2016 | 18.2 | Affx‐152072578 | Affx‐152034828 | 1.2 | 5.7 | 30.6 |
| qSW_A05‐2 | A05 | 2015, 2016 | 62.6 | Affx‐152071156 | Affx‐152081918 | 3.4 | 5.3 | 20.1 |
| qSW_A06‐1 | A06 | 2016 | 65.5 | Affx‐152028938 | Affx‐152030506 | 0.8 | 3.7 | 18.2 |
| qSW_A06‐2 | A06 | 2015 | 55.4 | Affx‐152050526 | Affx‐152049487 | 1.4 | 3.1 | 11.8 |
| qSW_A08 | A08 | 2016 | 92.5 | Affx‐152034595 | Affx‐152050655 | 2.9 | 3.4 | 25.3 |
| qSW_B05 | B05 | 2015, 2016 | 53.1 | Affx‐152030151 | Affx‐152052489 | 0.6 | 4.3 | 26.1 |
| qSW_B06‐1 | B06 | 2016 | 55.8 | Affx‐152026905 | Affx‐152044809 | 2.5 | 5.1 | 24.4 |
| qSW_B06‐2 | B06 | 2015 | 86.7 | Affx‐152074118 | Affx‐152040518 | 1.7 | 3.8 | 22.1 |
| qSW_B07‐1 | B07 | 2015 | 43.6 | Affx‐152070761 | Affx‐152061732 | 0.9 | 8.7 | 25.3 |
| qSW_B07‐2 | B07 | 2016 | 147.2 | Affx‐152034806 | Affx‐152027501 | 9.4 | 10.8 | 19.8 |
| qSW_B09 | B09 | 2015, 2016 | 61.3 | Affx‐152030882 | Affx‐152074441 | 2.8 | 4.5 | 19.2 |
| QTLs identified in NAM‐F | ||||||||
| 100 Pod weight | ||||||||
| qPW_A05‐3 | A05 | 2015, 2016 | 5.2 | Affx‐152077044 | Affx‐152051452 | 4.8 | 4.9 | 26.1 |
| qPW_A05‐2 | A05 | 2015, 2016 | 140.1 | Affx‐152026889 | Affx‐152055218 | 14 | 4.3 | 21.8 |
| qPW_A05‐1 | A05 | 2015, 2016 | 16.4 | Affx‐152083713 | Affx‐152066050 | 7.5 | 3.9 | 27.4 |
| qPW_A06‐1 | A06 | 2015 | 32.5 | Affx‐152031222 | Affx‐152041766 | 1.5 | 4 | 13 |
| qPW_A09‐1 | A09 | 2016 | 105.6 | Affx‐152070384 | Affx‐152079906 | 2.7 | 5.3 | 16.3 |
| qPW_B05‐1 | B05 | 2015, 2016 | 88.3 | Affx‐152038129 | Affx‐152069488 | 0.9 | 3.3 | 27 |
| qPW_B05‐2 | B05 | 2015, 2016 | 57.7 | Affx‐152078919 | Affx‐152079844 | 1.8 | 3.4 | 31 |
| qPW_B05‐3 | B05 | 2015, 2016 | 56.8 | Affx‐152031298 | Affx‐152078919 | 1 | 3.3 | 19.4 |
| qPW_B05‐4 | B05 | 2015, 2016 | 22.8 | Affx‐152076736 | Affx‐152028895 | 0.7 | 4.3 | 22 |
| qPW_B06‐2 | B06 | 2016 | 74.5 | Affx‐152080402 | Affx‐152041157 | 0.8 | 5.3 | 32.3 |
| qPW_B06‐1 | B06 | 2015 | 16.6 | Affx‐152043214 | Affx‐152073378 | 1.4 | 4.2 | 14.6 |
| qPW_B09‐1 | B09 | 2015, 2016 | 112.4 | Affx‐152065486 | Affx‐152081633 | 1.6 | 3.8 | 16.7 |
| 100 seed weight | ||||||||
| qSW_A05‐1 | A05 | 2015, 2016 | 11.2 | Affx‐152083713 | Affx‐152066050 | 7.5 | 4.2 | 28 |
| qSW_A05‐3 | A05 | 2015, 2016 | 139.3 | Affx‐152026889 | Affx‐152055218 | 14 | 7.7 | 40.3 |
| qSW_A05‐2 | A05 | 2015, 2016 | 2.2 | Affx‐152061849 | Affx‐152044122 | 2.3 | 3.4 | 17.9 |
| qSW_A06‐1 | A06 | 2015 | 82.3 | Affx‐152083869 | Affx‐152039817 | 0.4 | 4.7 | 30.7 |
| qSW_A07‐1 | A07 | 2016 | 78.3 | Affx‐152042213 | Affx‐152081932 | 1.4 | 5.8 | 34 |
| qSW_B05‐1 | B05 | 2015, 2016 | 109.4 | Affx‐152041353 | Affx‐152079400 | 0.8 | 3.4 | 21.2 |
| qSW_B05‐2 | B05 | 2015, 2016 | 57.7 | Affx‐152078919 | Affx‐152079844 | 1.8 | 4.6 | 35 |
| qSW_B05‐3 | B05 | 2015, 2016 | 22.8 | Affx‐152076736 | Affx‐152028895 | 0.7 | 9 | 40 |
| qSW_B06‐1 | B06 | 2015 | 74.6 | Affx‐152080402 | Affx‐152041157 | 0.8 | 4 | 34.3 |
| qSW_B06‐2 | B06 | 2016 | 50.2 | Affx‐152028010 | Affx‐152051179 | 0.4 | 3.6 | 35.7 |
| qSW_B06‐3 | B06 | 2015 | 81.3 | Affx‐152048400 | Affx‐152027597 | 1.5 | 7 | 36.2 |
LOD, Logarithm of odds; PVE, phenotypic variance explained.