Table 3.
SNP–trait associations (STAs) and genes corresponding to STAs identified in the NAM_Florida‐07 population
| SNP | Position in diploid genome | STA in QTL region | Trait | Year | P‐val | Gene ID | Position of genes in tetraploid genome | Gene features | |||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Chr | Position | Chr | Start | End | |||||||
| Affx‐152042939 | A05 | 100238896 | qPW_A05‐2 | SW, PW | 2015, 2016 | 8 | Aradu.G6GR7 | Ahy05 | 106199976 | 106200416 | Nodulin MtN21 |
| Affx‐152030262 | A05 | 101618480 | qPW_A05‐2 | SW, PW | 2015, 2016 | 6.6 | Aradu.PTC1G | Ahy05 | 107409300 | 107409642 | Spermidine synthase |
| Affx‐152073472 | A05 | 101953436 | qPW_A05‐2 | SW, PW | 2015, 2016 | 6.5 | Aradu.GEE52 | Ahy05 | 107743343 | 107743653 | Mannose‐1‐phosphate guanylyltransferase |
| Affx‐152041326 | A05 | 101972210 | qPW_A05‐2 | SW, PW | 2015, 2016 | 6.1 | Aradu.VSE1D | Ahy05 | 107758493 | 107758020 | E2F transcription factor |
| Affx‐152051216 | A06 | 105402882 | qPW_B06‐2 | PW | 2016 | 5.4 | Aradu.U4S3Y | Ahy06 | 108174915 | 108174330 | ATP‐binding ABC transporter |
| Affx‐152074153 | A07 | 1191903 | qSW_A07‐1 | SW, PW | 2015, 2016 | 6.2 | Aradu.DN3DB | Ahy07 | 429296 | 430399 | STERILE APETALA |
| Affx‐152065804 | A07 | 1473208 | qSW_A07‐1 | SW | 2015 | 5.3 | Aradu.HR82P | Ahy07 | 702139 | 701523 | ALG‐2 interacting protein |
| Affx‐152040866 | A07 | 88041 | ‐ | SW, PW | 2015, 2016 | 5.9 | Aradu.P9PXC | Ahy17 | 1437155 | 1436877 | Rho GDP dissociation inhibitor |
| Affx‐152032205 | A09 | 13985238 | qPW_A09‐1 | SW | 2016 | 10.4 | Aradu.VVP26 | Ahy09 | 14192792 | 14193209 | Aminoacyl‐tRNA ligases |
| Affx‐152077418 | A09 | 967133 | ‐ | SW | 2016 | 5.4 | Aradu.N0F41 | Ahy09 | 746523 | 745565 | XH/XS domain‐containing protein |
| Affx‐152043067 | B06 | 129731047 | qSW_B06‐1 | SW, PW | 2015 | 5.4 | Araip.CA56R | Ahy16 | 146391458 | 146392020 | unknown protein |
| Affx‐152052942 | B07 | 454008 | ‐ | SW, PW | 2015, 2016 | 8.7 | Araip.6B9LC | Ahy17 | 482067 | 481316 | Transmembrane emp24 domain‐containing protein p24beta2‐like |
| Affx‐152028084 | B09 | 16205446 | qPW_B09‐1 | SW | 2016 | 7.1 | Araip.25DGX | Ahy19 | 16462456 | 16462950 | Helicase‐like protein |
| Affx‐152036034 | B09 | 57421497 | qPW_B09‐1 | PW | 2016 | 6.1 | Araip.M90GE | Ahy19 | 58395165 | 58394788 | Cytidine/deoxycytidylate deaminase |