Table 3.

Significantly associated single‐nucleotide polymorphisms (SNP)s from exome capture sequencing that map closest to already known leaf rust resistant genes and located within a 10 Mb window away from the known candidate gene

Population	SNP	Chromosome	Position (bp)	P‐value a	Geneb	Distance (Mb)
Total	S15_2077073	1D	2 077 073	1.88E‐07	Lr21	0.4
Total	S4_669444522	4A	669 444 522	3.86E‐11	Lr34‐B	7.2
Top25%	S15_2077073	1D	2 077 073	1.95E‐06	Lr21	0.4
Top25%	S19_554396794	5D	554 396 794	3.76E‐08	Lr1	7.5
Inferior75%	S15_99767	1D	99 767	2.80E‐06	Lr21	2.4
Inferior75%	S4_669441424	4A	669 441 424	1.09E‐07	Lr34‐B	7.1
Inferior75%	S19_560500848	5D	560 500 848	1.94E‐06	Lr1	1.4
Inferior75%	S7_55412966	7A	55 412 966	3.21E‐06	Lr34‐B	5.4
Top50%	S4_669444182	4A	669 444 182	7.17E‐08	Lr34‐B	7.2
Top50%	S19_554396794	5D	554 396 794	3.46E‐08	Lr1	7.5
Inferior50%	S1_3668532	1A	3 668 532	2.45E‐09	Lr10	5.9

^a P‐value of the significance test for additive effects.

^bResistance genes: Lr21 (Huang et al., 2009), Lr34‐B (Krattinger et al., 2011), Lr1 (Cloutier et al., 2007) and Lr10 (Feuillet et al., 2003).