Table 1. Basic summary of RNA-sequencing results.
| Sample | Clean reads | Clean base (Gb) | GC (%) | ≥Q30% | Mapped reads | Unique mapped reads |
|---|---|---|---|---|---|---|
| 8-TR1 | 20,966,078 | 5.28 | 43.57 | 93.25 | 31,593,465 (75.34%) | 30,524,047 (72.79%) |
| 8-TR3a | 22,768,486 | 5.74 | 43.99 | 93.39 | 34,767,380 (76.35%) | 33,643,575 (73.88%) |
| 8-TR3b | 22,374,538 | 5.64 | 44.39 | 93.01 | 33,820,658 (75.58%) | 32,494,685 (72.62%) |
| 8-WT | 21,464,990 | 5.41 | 43.97 | 93.32 | 32,091,522 (74.75%) | 31,083,726 (72.41%) |
| CN-TR1 | 23,841,015 | 6.01 | 44.26 | 93.34 | 36,212,550(75.95%) | 34,651,869 (72.67%) |
| CN-TR3a | 27,169,034 | 6.85 | 43.51 | 93.46 | 41,579,472 (76.52%) | 40,488,609 (74.51%) |
| CN-TR3b | 25,171,405 | 6.34 | 43.62 | 92.99 | 37,875,481(75.24%) | 36,390,197 (72.28%) |
| CN-WT | 20,876,909 | 5.26 | 43.51 | 93.38 | 31,077,130 (74.43%) | 30,251,599 (72.45%) |
Notes.
- WT
- potato cultivar Desiree
- 8
- Phytophthora infestans isolate 89148 (race 0)
- CN
- P. infestans isolate CN152 (race 1, 3b, 4, 5, 6, 7, 8, 9, 10, 11)