REAGENT or RESOURCE |
SOURCE | IDENTIFIER |
---|---|---|
Bacterial and Virus Strains | ||
AAV-PHP.eb-syn-RCaMP1.07 | (Bethge et al., 2017) | |
retroAAV-syn-Flpo | (Xue et al., 2014) | Addgene Cat #60663 |
AAV2.1-Ef1α-dio-eGFP | (Saunders et al., 2012) | Addgene Cat #37084 |
retroAAV-syn-Cre | James M. Wilson | Addgene Cat #10553 |
AAV2.1-Ef1α-fio-mCardinalNLS | This paper | |
AAV2.1-Ef1α-fio-mTagBFP2H2B | This paper | |
Experimental Models: Organisms/Strains | ||
C57BL/6J mice | The Jackson Laboratory | JAX:000664 |
VGAT-ChR2-EYFP mice |
The Jackson Laboratory | JAX:014548 |
Software and Algorithms | ||
Motion Correction | (Pnevmatikakis and Giovannucci, 2017) | https://github.com/flatironinstitute/NoRMCorre |
Calcium Source Extraction | (Pnevmatikakis et al., 2016) | https://github.com/flatironinstitute/CaImAn-MATLAB |
Calcium Deconvolution | (Friedrich et al., 2017) | https://github.com/j-friedrich/OASIS |
Whisker Tracking | (Clack et al., 2012) | https://www.janelia.org/open-science/whisk-whisker-tracking |
MATLAB | Mathworks | https://www.mathworks.com/products/matlab.html |
LabVIEW | National Instruments | https://www.ni.com/en-us/shop/labview.html |