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. Author manuscript; available in PMC: 2021 May 6.
Published in final edited form as: Neuron. 2020 Mar 11;106(3):515–525.e5. doi: 10.1016/j.neuron.2020.02.004

Key Resources Table

REAGENT or
RESOURCE
SOURCE IDENTIFIER
Bacterial and Virus Strains
AAV-PHP.eb-syn-RCaMP1.07 (Bethge et al., 2017)
retroAAV-syn-Flpo (Xue et al., 2014) Addgene Cat #60663
AAV2.1-Ef1α-dio-eGFP (Saunders et al., 2012) Addgene Cat #37084
retroAAV-syn-Cre James M. Wilson Addgene Cat #10553
AAV2.1-Ef1α-fio-mCardinalNLS This paper
AAV2.1-Ef1α-fio-mTagBFP2H2B This paper
Experimental Models: Organisms/Strains
C57BL/6J mice The Jackson Laboratory JAX:000664
VGAT-ChR2-EYFP
mice
The Jackson Laboratory JAX:014548
Software and Algorithms
Motion Correction (Pnevmatikakis and Giovannucci, 2017) https://github.com/flatironinstitute/NoRMCorre
Calcium Source Extraction (Pnevmatikakis et al., 2016) https://github.com/flatironinstitute/CaImAn-MATLAB
Calcium Deconvolution (Friedrich et al., 2017) https://github.com/j-friedrich/OASIS
Whisker Tracking (Clack et al., 2012) https://www.janelia.org/open-science/whisk-whisker-tracking
MATLAB Mathworks https://www.mathworks.com/products/matlab.html
LabVIEW National Instruments https://www.ni.com/en-us/shop/labview.html