Table 1.
Overall statistics of RNA-Seq data.
| Species | Growth phase | Number of raw reads | Average length (bp) | Number of trimmed_read | Percentage trimmed | Trimmed reads length (bp) | Number of randomly mapped reads | Number of uniquely mapped reads | Percentage of uniquely mapped reads (%) | Raw read FASTQ accession |
|---|---|---|---|---|---|---|---|---|---|---|
| S. avermitilis MA-4680 | E1 | 15,222,700 | 101 | 15,222,324 | 100.00 | 100.9 | 14,743,001 | 14,475,094 | 95.09 | SRP158023 |
| E2 | 15,540,304 | 101 | 15,539,540 | 100.00 | 100.8 | 14,842,965 | 14,232,752 | 91.59 | ||
| T1 | 18,962,695 | 101 | 18,961,958 | 100.00 | 100.8 | 17,584,931 | 16,820,053 | 88.70 | ||
| T2 | 18,054,983 | 101 | 18,054,302 | 100.00 | 100.9 | 16,337,750 | 14,948,455 | 82.80 | ||
| L1 | 13,904,005 | 101 | 13,903,462 | 100.00 | 100.9 | 12,858,182 | 12,238,050 | 88.02 | ||
| L2 | 16,814,305 | 101 | 16,813,651 | 100.00 | 100.8 | 15,778,544 | 15,212,127 | 90.47 | ||
| S1 | 16,662,552 | 101 | 16,661,924 | 100.00 | 100.9 | 15,627,234 | 14,761,494 | 88.59 | ||
| S2 | 16,278,766 | 101 | 16,278,123 | 100.00 | 100.9 | 14,643,706 | 12,519,514 | 76.91 | ||
| S. clavuligerus ATCC 27064 | E1 | 14,798,628 | 101 | 14,798,315 | 100.00 | 100.8 | 11,098,664 | 9,036,995 | 61.07 | SRP188290 |
| E2 | 14,979,238 | 101 | 14,978,853 | 100.00 | 100.8 | 10,822,676 | 8,622,479 | 57.56 | ||
| T1 | 15,701,669 | 101 | 15,701,289 | 100.00 | 100.8 | 10,501,955 | 9,056,077 | 57.68 | ||
| T2 | 12,420,952 | 101 | 12,420,654 | 100.00 | 100.8 | 10,776,124 | 10,096,097 | 81.28 | ||
| L1 | 13,207,846 | 101 | 13,207,520 | 100.00 | 100.8 | 7,770,986 | 7,283,393 | 55.15 | ||
| L2 | 13,782,302 | 101 | 13,782,042 | 100.00 | 100.9 | 7,706,785 | 7,193,337 | 52.19 | ||
| S1 | 13,526,270 | 101 | 13,525,948 | 100.00 | 100.8 | 12,683,457 | 12,292,000 | 90.88 | ||
| S2 | 13,272,332 | 101 | 13,272,058 | 100.00 | 100.6 | 12,663,763 | 11,921,210 | 89.82 | ||
| S. lividans TK24 | E1 | 15,062,705 | 101 | 15,062,394 | 100.00 | 100.9 | 13,098,717 | 12,182,999 | 80.88 | PRJEB31507 |
| E2 | 15,941,901 | 101 | 15,941,640 | 100.00 | 100.9 | 14,010,897 | 12,726,791 | 79.83 | ||
| T1 | 14,403,255 | 101 | 14,402,994 | 100.00 | 100.9 | 12,594,960 | 11,858,708 | 82.34 | ||
| T2 | 15,701,759 | 101 | 15,701,526 | 100.00 | 100.9 | 14,333,364 | 13,320,933 | 84.84 | ||
| L1 | 16,081,294 | 101 | 16,080,979 | 100.00 | 100.8 | 14,679,573 | 14,003,911 | 87.08 | ||
| L2 | 15,402,577 | 101 | 15,402,313 | 100.00 | 100.8 | 13,896,464 | 12,784,443 | 83.00 | ||
| S1 | 15,650,348 | 101 | 15,650,033 | 100.00 | 100.9 | 14,016,141 | 12,866,712 | 82.22 | ||
| S2 | 17,244,360 | 101 | 17,243,710 | 100.00 | 100.9 | 13,310,075 | 10,371,378 | 60.15 | ||
| S. venezuelae ATCC15439 | E1 | 13,343,482 | 101 | 13,339,752 | 99.97 | 100.9 | 11,002,160 | 9,468,993 | 70.98 | PRJEB34219 |
| E2 | 13,150,521 | 101 | 13,147,020 | 99.97 | 100.9 | 10,562,003 | 9,986,725 | 75.96 | ||
| T1 | 14,479,417 | 101 | 14,474,269 | 99.96 | 100.9 | 13,219,134 | 12,480,953 | 86.23 | ||
| T2 | 12,310,427 | 101 | 12,307,770 | 99.98 | 100.9 | 10,406,022 | 9,456,882 | 76.84 | ||
| L1 | 12,192,708 | 101 | 12,173,069 | 99.84 | 100.9 | 10,371,418 | 9,415,019 | 77.34 | ||
| L2 | 12,728,235 | 101 | 12,723,109 | 99.96 | 100.9 | 10,435,448 | 8,569,124 | 67.35 | ||
| S1 | 13,022,122 | 101 | 13,019,964 | 99.98 | 100.9 | 10,770,484 | 9,268,463 | 71.19 | ||
| S2 | 11,969,031 | 101 | 11,957,872 | 99.91 | 100.9 | 9,138,846 | 8,090,654 | 67.66 | ||
| S. tsukubaensis NRRL18488 | E1 | 41,652,947 | 51 | 41,627,595 | 99.94 | 50.9 | 41,292,669 | 31,773,092 | 76.33 | SRP103795 |
| E2 | 35,401,018 | 51 | 35,382,993 | 99.95 | 50.8 | 34,839,050 | 34,058,311 | 96.26 | ||
| T1 | 53,758,514 | 51 | 53,721,965 | 99.93 | 50.8 | 52,441,945 | 51,123,244 | 95.16 | ||
| T2 | 25,432,836 | 51 | 25,421,462 | 99.96 | 50.8 | 24,909,553 | 24,095,211 | 94.78 | ||
| L1 | 83,469,019 | 51 | 83,456,281 | 99.98 | 50.6 | 82,904,135 | 76,980,981 | 92.24 | ||
| L2 | 39,371,004 | 51 | 39,339,183 | 99.92 | 50.8 | 38,739,771 | 36,079,744 | 91.71 | ||
| S1 | 78,596,694 | 51 | 78,587,491 | 99.99 | 50.6 | 77,714,238 | 61,851,605 | 78.70 | ||
| S2 | 51,475,167 | 51 | 51,441,666 | 99.93 | 50.9 | 50,553,226 | 44,055,753 | 85.64 |