Table 6.
Genes | Total (n=1220) | 2013 (n=204) | 2014 (n=205) | 2015 (n=142) | 2016 (n=266) | 2017 (n=403) | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
tdh | + | + | – | – | + | + | – | – | + | + | – | – | + | + | – | – | + | + | – | – | + | + | – | – |
trh | – | + | + | – | – | + | + | – | – | + | + | – | – | + | + | – | – | + | + | – | – | + | + | – |
n | 1150 | 13 | 6 | 51 | 194 | 1 | 2 | 7 | 192 | 1 | 2 | 10 | 136 | 3 | 1 | 2 | 250 | 3 | 0 | 13 | 378 | 5 | 1 | 19 |
T3SS1 | ||||||||||||||||||||||||
VP1670[vscP] | 1144 | 13 | 6 | 51 | 192 | 1 | 2 | 7 | 191 | 1 | 2 | 10 | 136 | 3 | 1 | 2 | 248 | 3 | 0 | 13 | 377 | 5 | 1 | 19 |
VP1686[vopS] | 1102 | 12 | 6 | 44 | 183 | 1 | 2 | 6 | 171 | 1 | 2 | 9 | 136 | 3 | 1 | 2 | 239 | 2 | 0 | 9 | 373 | 5 | 1 | 18 |
VP1689[vscK] | 1129 | 13 | 6 | 48 | 189 | 1 | 2 | 6 | 179 | 1 | 2 | 10 | 136 | 3 | 1 | 2 | 248 | 3 | 0 | 12 | 377 | 5 | 1 | 18 |
VP1694[vscF] | 1114 | 12 | 5 | 36 | 183 | 1 | 2 | 5 | 182 | 1 | 2 | 7 | 133 | 3 | 0 | 2 | 245 | 2 | 0 | 7 | 371 | 5 | 1 | 15 |
All four genes | 1078 | 12 | 5 | 33 | 173 | 1 | 2 | 5 | 167 | 1 | 2 | 7 | 133 | 3 | 0 | 2 | 236 | 2 | 0 | 4 | 369 | 5 | 1 | 15 |
T3SS2α | ||||||||||||||||||||||||
VP1362[vopB2] | 1120 | 4 | 2 | 0 | 190 | 1 | 1 | 0 | 182 | 0 | 0 | 0 | 125 | 0 | 0 | 0 | 247 | 2 | 0 | 0 | 376 | 1 | 1 | 0 |
VP1339[vscC2] | 1137 | 4 | 2 | 0 | 192 | 1 | 1 | 0 | 192 | 0 | 0 | 0 | 135 | 0 | 0 | 0 | 249 | 2 | 0 | 0 | 369 | 1 | 1 | 0 |
VP1335[vscS2] | 1143 | 4 | 2 | 0 | 192 | 1 | 1 | 0 | 191 | 0 | 0 | 0 | 136 | 0 | 0 | 0 | 249 | 2 | 0 | 0 | 375 | 1 | 1 | 0 |
VP1327[vopT] | 1132 | 4 | 2 | 0 | 192 | 1 | 1 | 0 | 183 | 0 | 0 | 0 | 136 | 0 | 0 | 0 | 248 | 2 | 0 | 0 | 373 | 1 | 1 | 0 |
All four genes | 1108 | 4 | 2 | 0 | 189 | 1 | 1 | 0 | 182 | 0 | 0 | 0 | 125 | 0 | 0 | 0 | 246 | 2 | 0 | 0 | 366 | 1 | 1 | 0 |
T3SS2β | ||||||||||||||||||||||||
vscC2 | 0 | 8 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 |
vopB2 | 0 | 13 | 1 | 2 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 5 | 1 | 2 |
vopC | 0 | 11 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 3 | 0 | 1 |
vscS2 | 0 | 13 | 1 | 2 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 5 | 1 | 2 |
All four genes | 0 | 8 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 |