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. 2020 May 10;6(1):veaa029. doi: 10.1093/ve/veaa029

Figure 4.

Figure 4.

Recombination analysis of E11 genomes. (A) Bootscanning recombination analysis of E11 strains and other closely related enterovirus B genotypes. The outbreak representative strain (Accession No. MN597939) was used as query sequence. The dashed line indicates >70% bootstrap support. The genome structure of the E11 was annotated according to the E11 reference strain KY981558. ML trees were construct separately for the 5’UTR-3A, 2B-3B (B) and 5’UTR-3A, 3C-3’UTR (C) parts of the E11 genome and genomes from other closely related enterovirus genotypes. The E11 genomes generated in this study (n = 32) and collected from public database (n = 41) were highlighted with black circles and light grey dots, respectively. The different parts of the genome from the same virus were connected with a line. In the phylogeny of 2B-3B and 3C-3’UTR, other enterovirus genotypes clustered with E11 suggesting potential recombination, and name of these enterovirus genotypes were noted on the right.