Antibodies |
|
Rabbit polyclonal anti-Cyclooxygenase 2 (COX-2) |
Cayman |
Cat# 160106; RRID:AB_10077935 |
Rabbit polyclonal anti-Progesterone Receptor (PGR) |
Dako |
Cat# A0098; RRID:AB_2315192 |
Mouse monoclonal H2AX (pS139) Mouse, Alexa Fluor 647 |
BD Biosciences |
Cat# 560447; RRID:AB_1645414 |
Anti-NF-κB p65 (acetyl K310) antibody - ChIP Grade |
Abcam |
Cat# ab19870; RRID:AB_776753 |
Rabbit polyclonal Anti-beta Actin |
Abcam |
Cat# ab8227; RRID:AB_2305186 |
Rabbit polyclonal anti-GAPDH |
Abcam |
Cat# ab9485; RRID:AB_307275 |
Rabbit polyclonal anti-alpha Tubulin |
Abcam |
Cat# ab4074; RRID:AB_2288001 |
Rat monoclonal anti-Neutrophil |
Abcam |
Cat# ab2557; RRID:AB_303154 |
Rabbit polyclonal anti-Neutrophil Elastase |
Abcam |
Cat# ab68672; RRID:AB_1658868 |
Goat polyclonal anti-LYVE1 |
R&D Systems |
Cat# AF2125; RRID:AB_2297188 |
Rabbit polyclonal anti-Malondialdehyde (MDA) |
Abcam |
Cat# ab6463; RRID:AB_305484 |
Rat Anti-CD16 / CD32 Monoclonal (Fc Block) |
BD Biosciences |
Cat# 553142; RRID:AB_394657 |
Rat Anti-CD45 Monoclonal, PE-Cy7 Conjugated |
BD Biosciences |
Cat# 552848; RRID:AB_394489 |
Rat Anti-CD11b Monoclonal, APC-Cy7 Conjugated |
BD Biosciences |
Cat# 557657; RRID:AB_396772 |
CD11c Monoclonal (N418), PE-Cyanine5 |
eBioscience |
Cat# 15-0114-82; RRID:AB_468717 |
FITC anti-mouse I-A/I-E |
Biolegend |
Cat# 107606; RRID:AB_313321 |
Rat Anti-Mouse Ly-6G Monoclonal, V450 Conjugated |
BD Biosciences |
Cat# 560603; RRID:AB_1727564 |
Brilliant Violet 421 anti-mouse Ly-6C |
Biolegend |
Cat# 128031; RRID:AB_2562177 |
PE anti-mouse/human CD45R/B220 |
Biolegend |
Cat# 103207; RRID:AB_312992 |
APC Rat Anti-Mouse CD8a |
BD Biosciences |
Cat# 553035; RRID:AB_398527 |
Goat anit-rabbit, HRP-conjugated |
Vector Loboratories |
Cat# PK-6101; RRID:AB_2336820 |
Donkey anit-rat, HRP-conjugated |
Jackson Immunoresearch |
Cat# 712-035-150; RRID:AB_2340638 |
Donkey anit-rabbit, AP-conjugated |
Jackson Immunoresearch |
Cat# 711-055-152; RRID:AB_2340591 |
|
Chemicals, Peptides, and Recombinant Proteins |
|
Normal Donkey Serum |
Jackson Immunoresearch |
Cat# 017-000-121 |
Pregnant Mare Serum Gonadotropin |
Sigma-Aldrich |
Cat# G4877 |
Human chorionic gonadotropin |
Sigma-Aldrich |
Cat# CG10 |
M199 culture media |
Life Technologies, Inc. |
Cat# 12350–039 |
DMEM/F-12, HEPES |
GIBCO |
Cat# 11330–032 |
ITS Liquid Media Supplement (100 ×) |
Sigma-Aldrich |
Cat# I3146 |
Penicillin-Streptomycin (10,000 U/mL) |
GIBCO |
Cat# 15140–122 |
Sodium bicarbonate |
Sigma-Aldrich |
Cat# S5761 |
Sucrose |
Sigma-Aldrich |
Cat# S0389 |
Ethylene glycol-bis(2-aminoethylether)-N,N,N′,N′-tetraacetic acid |
Sigma-Aldrich |
Cat# E3889 |
Fetal Bovine Serum |
Sigma-Aldrich |
Cat# F2442 |
Collagenase type I |
Invitrogen |
Cat# 17100–017 |
Deoxyribonuclease I |
Sigma-Aldrich |
Cat# D4527 |
Bovine serum albumin |
Sigma-Aldrich |
Cat# A9418 |
DAB Peroxidase (HRP) Substrate Kit (with Nickel), 3,3′-diaminobenzidine |
Vector Loboratories |
Cat# SK-4100 |
Trichostatin A |
Sigma-Aldrich |
Cat# T8552 |
Nicotinamide |
Sigma-Aldrich |
Cat# 72340 |
RU486 (mifepristone) |
Cayman |
Cat# 10006317 |
Fetal Bovine Serum Stain Buffer |
BD Biosciences |
Cat# 554656 |
Benzene |
Sigma-Aldrich |
Cat# 270709 |
Ethyl acetate |
Sigma-Aldrich |
Cat# 270989 |
Methanol |
Sigma-Aldrich |
Cat# 34860 |
GelRed® Nucleic Acid Gel Stain |
Biotium |
Cat# 41003 |
|
Critical Commercial Assays |
|
Single-Cell 3′ Chromium kit V3 |
10X Genomics |
Cat# PN-1000092 |
Chromatin immunoprecipitation (ChIP) assays kit |
Abcam |
Cat# ab500 |
PGE2 enzyme immunoassay (EIA) kit |
Cayman |
Cat# 514010 |
|
Deposited Data |
Mouse ovary single-cell RNA-seq dataset |
This paper |
GEO: GSE145107
|
Mouse granulosa cell ChIP-seq data |
Dinh et al., 2019 |
GEO: GSE115820
|
|
Experimental Models: Organisms/Strains |
Mouse: Pgrflox/flox, C57BL/6 background |
Fernandez-Valdivia et al., 2010 |
N/A |
Mouse: Esr2iCre/iCre, C57BL/6 background |
In house, available from Jackson laboratory |
JAX stock #028717 |
Mouse: Zp3Cre/Wt, C57BL/6 background |
Jackson laboratory |
JAX stock #003651 |
|
Oligonucleotides |
|
PCR primers |
Table S2 |
N/A |
|
Software and Algorithms |
|
Cell Ranger 3.0.2 |
10x Genomics |
https://support.10xgenomics.com/single-cell-gene-expression/software/release-notes/3–0 |
R (v3.5) |
R Core Team, 2013 |
https://www.r-project.org/ |
Seurat R package (v3.0.0) |
Satija et al., 2015 |
https://satijalab.org/seurat/ |
Monocle R package (v2.10.1) |
Trapnell et al., 2014 |
http://cole-trapnell-lab.github.io/monocle-release/ |
Uniform Manifold Approximation and Projection (UMAP) |
McInnes et al., 2018 |
|
Hamamatsu NDP viewer V2 |
Hamamatsu Photonics |
https://www.hamamatsu.com/us/en/product/type/U12388-01/index.html |
ImageJ |
Schneider et al., 2012 |
https://imagej.nih.gov/ij/plugins/cell-counter.html |
FCS Express 6 |
De Novo Software |
https://denovosoftware.com/ |
GraphPad Prism |
GraphPad Software |
https://www.graphpad.com/scientific-software/prism/ |
SPSS version 18.0 |
SPSS Inc. |
https://www.ibm.com/analytics/spss-statistics-software |