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Phylogenetic Analysis of SARS-CoV-2 and Representative Viruses from the Subgenus Sarbecoronavirus
(A) Phylogenetic tree of the full-length virus genome.
(B) The S gene.
(C) The RBD.
(D) The RdRp.
Phylogenetic analysis was performed using RAxML [21] with 1,000 bootstrap replicates, employing the GTR nucleotide substitution model. RBD is delimited as the gene region 991–1,572 of the spike gene according to [6]. All the trees are midpoint rooted for clarity.
See also Figure S4.
