Table 1.
Sequence Identity for SARS-CoV-2 Compared with RmYN02 and Representative Beta-CoV Genomes
| Strain | Complete Genome | Gene Region |
||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1ab | S | RBD | 3a | E | M | 6 | 7a | 7b | 8 | N | 10 | |||
| Nucleotide sequences | RmYN02 | 93.3%a | 97.2% | 71.9% | 61.3% | 96.4% | 98.7% | 94.8% | 96.8% | 96.2% | 92.4% | 45.8% | 97.3% | 99.1% |
| RaTG13 | 96.1% | 96.5% | 92.9% | 85.3% | 96.3% | 99.6% | 95.4% | 98.4% | 95.6% | 99.2% | 97.0% | 96.9% | 99.1% | |
| ZC45 | 87.6% | 89.0% | 75.1% | 62.1% | 87.8% | 98.7% | 93.4% | 95.2% | 88.8% | 94.7% | 88.5% | 91.1% | 99.1% | |
| ZXC21 | 87.4% | 88.7% | 74.6% | 60.6% | 88.9% | 98.7% | 93.4% | 95.2% | 89.1% | 95.5% | 88.5% | 91.2% | / | |
| pangolin/GD/2019b | – | 90.8% | 89.3% | – | 93.4% | 98.3% | 93.1% | 94.6% | 93.4% | – | 92.1% | 96.1% | – | |
| pangolin/GX/P5L/2017 | 85.2% | 84.7% | 83.2% | 79.9% | 87.0% | 97.4% | 91.3% | 90.9% | 86.6% | 81.8% | 80.6% | 91.0% | 94.0% | |
| SARS-CoV GZ02 | 78.9% | 79.6% | 72.3% | 73.8% | 75.6% | 93.5% | 85.1% | 74.5% | 82.1% | 83.0% | 45.3% | 88.1% | / | |
| Amino acid sequences | RmYN02 | N/A | 98.8% | 72.9% | 62.4% | 96.7% | 100.0% | 98.2% | 96.7% | 95.9% | 83.7% | 27.3% | 98.6% | 97.4% |
| RaTG13 | N/A | 98.5% | 97.4% | 89.3% | 97.8% | 100.0% | 98.6% | 100.0% | 97.5% | 97.7% | 95.0% | 99.0% | 97.4% | |
| ZC45 | N/A | 95.6% | 80.2% | 63.5% | 90.9% | 100.0% | 98.6% | 93.4% | 87.6% | 93.0% | 94.2% | 94.3% | 97.4% | |
| ZXC21 | N/A | 95.2% | 79.6% | 62.9% | 92.0% | 100.0% | 98.6% | 93.4% | 88.4% | 93.0% | 94.2% | 94.3% | / | |
| pangolin/GD/2019b | N/A | 97.1% | 90.7% | 97.4% | 97.4% | 100.0% | 98.6% | 96.6% | 97.5% | – | 94.9% | 97.6% | – | |
| pangolin/GX/P5L/2017 | N/A | 92.6% | 92.4% | 86.8% | 89.8% | 100.0% | 98.2% | 95.1% | 88.4% | 72.1% | 87.6% | 93.8% | 84.2% | |
| SARS-CoV GZ02 | N/A | 86.2% | 76.2% | 74.6% | 73.1% | 94.7% | 89.6% | 68.9% | 85.2% | 79.5% | 29.7% | 90.5% | / | |
Pangolin/GD/2019 and pangolin/GX/P5L/2017 (EPI_ISL_410540). –, no corresponding values in [6]; /, this open reading frame is not found; N/A, not available.
a
Sequence identities for RmYN02 compared with the SARS-CoV GZ02 (accession number AY390556); the bat SARS-like coronaviruses RaTG13 (EPI_ISL_402131), ZC45 (MG772933), and ZXC21 (MG772934); and the pangolin SARS-like coronaviruses
b
Pangolin/GD/2019 represents a merger of GD/P1L and GD/P2S, and these values were adapted from [6]