Patterns of methylome divergence for multiple functional genomic categories Methylome divergence pattern in promoter (A), gene body (B), CGI (C), CGI shore (D), CGI shelf (E), LINE (F), SINE (G), LTR (H), satellite (I), and other repetitive DNA elements (J). The methylation levels of DMFs were used for hierarchical clustering of samples. Height denotes the dissimilarity among samples.