Fig. 6.

Alluvial plots illustrating the performance of PWMs from particular CIS-BP TF families in ChIP-seq (a), SELEX 10% (b), and PBM (c) benchmarks. For each TF, PWMs displaying the average AUC ROC of no less than 0.75 (a, b) or Pearson correlation coefficient of no less than 0.3 (c) across the data sets for this TF are selected for link construction. PWMs grouped by CIS-BP TF family are shown on the left; TFs are shown on the right. The link width is proportional to the square root of the number of appropriate PWM-TF pairs. Only TFs with at least one ChIP-seq data set and one HT-SELEX data set are included. For illustration, selected motif families are highlighted with color