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. Author manuscript; available in PMC: 2020 Oct 1.
Published in final edited form as: Nat Protoc. 2020 Feb 24;15(4):1338–1370. doi: 10.1038/s41596-019-0261-4
Parameter Value
Static modification Carbamidomethyl (C)
+57.02146 Da
TMT-6 (peptide N-term, K)
+229.162932 Da
Dynamic modification Oxidation (M)
Enzyme Trypsin
Maximum missed cleavages 4
Peptide mass tolerance (Da) 1.00
Peptide FDR (%) 1