KEY RESOURCES TABLE
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Bacterial and Virus Strains | ||
Biological Samples | ||
Chemicals, Peptides, and Recombinant Proteins | ||
20 uM Cas9-NLS | NEB | Cat #: M0646T |
Alt-R CRISPR-Cas9 tracrRNA | IDT | Cat #: 1072532 |
Nuclease-Free Duplex Buffer | IDT | Cat # 11-01-03-01 |
Phenol Red | Sigma-Aldrich | Cat #: P0290 |
MS-222 | Sigma-Aldrich | Cat #: E10521 |
Low-melt agarose | Bio-Rad | Cat #: 161-3111 |
Critical Commercial Assays | ||
GeneJET Gel Extraction Kit | Thermo Scientific | Cat #: K0691 |
Deposited Data | ||
Experimental Models: Cell Lines | ||
Experimental Models: Organisms/Strains | ||
Zebrafish: AB | ZIRC | ZFIN ID: ZDB-GENO-960809-7 |
Zebrafish: Tg(sp7:EGFP)b1212 | ZIRC | ZFIN ID: ZDB-ALT-100402-1 |
Oligonucleotides | ||
Protospacer sequence for crRNA design: plod2, AAGTATCCGTCTGTACGCAG | IDT | Alt-R® CRISPR-Cas9 crRNA, 2 nmol, custom design |
Protospacer sequence for crRNA design: bmp1a, ATACGTGGGCCGCAGAGGAG | IDT | Alt-R® CRISPR-Cas9 crRNA, 2 nmol, custom design |
Protospacer sequence for crRNA design: sp7:EGFP, GATGGCCGCGTCGATTCTGG | IDT | Alt-R® CRISPR-Cas9 crRNA, 2 nmol, custom design |
sp7 F: ACCCCAAGAATCAAACCCCA sp7 R: AGTTAACATGCAGTAATCATCGCA | Sigma-Aldrich | Custom oligo |
plod2 F: ACTGGAAAGCAGTGGACAGG plod2 R: AGGGTTGAAGACGGGGTAGA | Sigma-Aldrich | Custom oligo |
bmp1a F: AGTTGGACGATATTTACCCTGGT bmp1a R: CGCACCCCCAGAGAAAACC | Sigma-Aldrich | Custom oligo |
Recombinant DNA | ||
Software and Algorithms | ||
Fiji | Schindelin et al., 2012 | https://imagej.net/Fiji |
Prism 6 and 7 | GraphPad | https://www.graphpad.com/ |
R | R Core Team, 2016 | https://www.R-project.org/ |
FishCuT | Hur et al., 2017 | https://github.com/elifesciences-publications/FishCuT |
MATLAB | MathWorks | https://www.mathworks.com/products/matlab.html |
Other |