Table 1.
Isolates and GenBank accession numbers used in the phylogenetic analyses of Diaporthe.
| Species | Isolate | Host | Location | GenBank accession numbers | ||||
|---|---|---|---|---|---|---|---|---|
| ITS | cal | his3 | tef1 | tub2 | ||||
| D. acericola | MFLUCC 17-0956 | Acer negundo | Italy | KY964224 | KY964137 | NA | KY964180 | KY964074 |
| D. acerigena | CFCC 52554 | Acer tataricum | China | MH121489 | MH121413 | MH121449 | MH121531 | NA |
| D. albosinensis | CFCC 53066 | Betula albosinensis | China | MK432659 | MK442979 | MK443004 | MK578133 | MK578059 |
| CFCC 53067 | Betula albosinensis | China | MK432660 | MK442980 | MK443005 | MK578134 | MK578060 | |
| D. alnea | CBS 146.46 | Alnus sp. | Netherlands | KC343008 | KC343250 | KC343492 | KC343734 | KC343976 |
| D. ambigua | CBS 114015 | Pyrus communis | South Africa | KC343010 | KC343252 | KC343494 | KC343736 | KC343978 |
| D. anacardii | CBS 720.97 | Anacardium occidentale | East Africa | KC343024 | KC343266 | KC343508 | KC343750 | KC343992 |
| D. angelicae | CBS 111592 | Heracleum sphondylium | Austria | KC343027 | KC343269 | KC343511 | KC343753 | KC343995 |
| D. apiculatum | CGMCC 3.17533 | Camellia sinensis | China | KP267896 | NA | NA | KP267970 | KP293476 |
| D. aquatica | IFRDCC 3051 | Aquatic habitat | China | JQ797437 | NA | NA | NA | NA |
| D. arctii | CBS 139280 | Arctium lappa | Austria | KJ590736 | KJ612133 | KJ659218 | KJ590776 | KJ610891 |
| D. aseana | MFLUCC 12-0299a | Unknown dead leaf | Thailand | KT459414 | KT459464 | NA | KT459448 | KT459432 |
| D. asheicola | CBS 136967 | Vaccinium ashei | Chile | KJ160562 | KJ160542 | NA | KJ160594 | KJ160518 |
| D. baccae | CBS 136972 | Vaccinium corymbosum | Italy | KJ160565 | NA | MF418264 | KJ160597 | NA |
| D. beilharziae | BRIP 54792 | Indigofera australis | Australia | JX862529 | NA | NA | JX862535 | KF170921 |
| D. benedicti | BPI 893190 | Salix sp. | USA | KM669929 | KM669862 | NA | KM669785 | NA |
| D. betulae | CFCC 50469 | Betula platyphylla | China | KT732950 | KT732997 | KT732999 | KT733016 | KT733020 |
| D. betulina | CFCC 52560 | Betula albo-sinensis | China | MH121495 | MH121419 | MH121455 | MH121537 | MH121577 |
| D. bicincta | CBS 121004 | Juglans sp. | USA | KC343134 | KC343376 | KC343618 | KC343860 | KC344102 |
| D. caryae | CFCC 52563 | Carya illinoensis | China | MH121498 | MH121422 | MH121458 | MH121540 | MH121580 |
| D. cassines | CPC 21916 | Cassine peragua | South Africa | KF777155 | NA | NA | KF777244 | NA |
| D. celeris | CPC 28262 | Vitis vinifera | Czech Republic | MG281017 | MG281712 | MG281363 | MG281538 | MG281190 |
| D. cercidis | CFCC 52565 | Cercis chinensis | China | MH121500 | MH121424 | MH121460 | MH121542 | MH121582 |
| D. chamaeropis | CBS 454.81 | Chamaerops humilis | Greece | KC343048 | KC343290 | KC343532 | KC343774 | KC344016 |
| D. charlesworthii | BRIP 54884m | Rapistrum rugostrum | Australia | KJ197288 | NA | NA | KJ197250 | KJ197268 |
| D. chensiensis | CFCC 52567 | Abies chensiensis | China | MH121502 | MH121426 | MH121462 | MH121544 | MH121584 |
| D. cichorii | MFLUCC 17-1023 | Cichorium intybus | Italy | KY964220 | KY964133 | NA | KY964176 | KY964104 |
| D. cinnamomi | CFCC 52569 | Cinnamomum sp. | China | MH121504 | NA | MH121464 | MH121546 | MH121586 |
| D. citriasiana | CGMCC 3.15224 | Citrus unshiu | China | JQ954645 | KC357491 | KJ490515 | JQ954663 | KC357459 |
| D. citrichinensis | CGMCC 3.15225 | Citrus sp. | China | JQ954648 | KC357494 | NA | JQ954666 | NA |
| D. compactum | CGMCC 3.17536 | Camellia sinensis | China | KP267854 | NA | KP293508 | KP267928 | KP293434 |
| D. conica | CFCC 52571 | Alangium chinense | China | MH121506 | MH121428 | MH121466 | MH121548 | MH121588 |
| D. coryli | CFCC 53083 | Corylus mandshurica | China | MK432661 | MK442981 | MK443006 | MK578135 | MK578061 |
| CFCC 53084 | Corylus mandshurica | China | MK432662 | MK442982 | MK443007 | MK578136 | MK578062 | |
| D. cucurbitae | CBS 136.25 | Arctium sp. | Unknown | KC343031 | KC343273 | KC343515 | KC343757 | KC343999 |
| D. cuppatea | CBS 117499 | Aspalathus linearis | South Africa | KC343057 | KC343299 | KC343541 | KC343783 | KC344025 |
| D. cynaroidis | CBS 122676 | Protea cynaroides | South Africa | KC343058 | KC343300 | KC343542 | KC343784 | KC344026 |
| D. cytosporella | FAU461 | Citrus limon | Italy | KC843307 | KC843141 | NA | KC843116 | KC843221 |
| D. discoidispora | ZJUD89 | Citrus unshiu | China | KJ490624 | NA | KJ490566 | KJ490503 | KJ490445 |
| D. dorycnii | MFLUCC 17-1015 | Dorycnium hirsutum | Italy | KY964215 | NA | NA | KY964171 | KY964099 |
| D. elaeagni-glabrae | CGMCC 3.18287 | Elaeagnus glabra | China | KX986779 | KX999281 | KX999251 | KX999171 | KX999212 |
| D. endophytica | CBS 133811 | Schinus terebinthifolius | Brazil | KC343065 | KC343307 | KC343549 | KC343791 | KC343065 |
| D. eres | AR5193 | Ulmus sp. | Germany | KJ210529 | KJ434999 | KJ420850 | KJ210550 | KJ420799 |
| D. eucalyptorum | CBS 132525 | Eucalyptus sp. | Australia | NR120157 | NA | NA | NA | NA |
| D. foeniculacea | CBS 123208 | Foeniculum vulgare | Portugal | KC343104 | KC343346 | KC343588 | KC343830 | KC344072 |
| D. fraxini-angustifoliae | BRIP 54781 | Fraxinus angustifolia | Australia | JX862528 | NA | NA | JX862534 | KF170920 |
| D. fraxinicola | CFCC 52582 | Fraxinus chinensis | China | MH121517 | MH121435 | NA | MH121559 | NA |
| D. fructicola | MAFF 246408 | Passiflora edulis × P. edulis f. flavicarpa | Japan | LC342734 | LC342738 | LC342737 | LC342735 | LC342736 |
| D. fusicola | CGMCC 3.17087 | Lithocarpus glabra | China | KF576281 | KF576233 | NA | KF576256 | KF576305 |
| D. garethjonesii | MFLUCC 12-0542a | Unknown dead leaf | Thailand | KT459423 | KT459470 | NA | KT459457 | KT459441 |
| D. guangxiensis | JZB320094 | Vitis vinifera | China | MK335772 | MK736727 | NA | MK523566 | MK500168 |
| D. helicis | AR5211 | Hedera helix | France | KJ210538 | KJ435043 | KJ420875 | KJ210559 | KJ420828 |
| D. heterophyllae | CBS 143769 | Acacia heterohpylla | France | MG600222 | MG600218 | MG600220 | MG600224 | MG600226 |
| D. hubeiensis | JZB320123 | Vitis vinifera | China | MK335809 | MK500235 | NA | MK523570 | MK500148 |
| D. incompleta | CGMCC 3.18288 | Camellia sinensis | China | KX986794 | KX999289 | KX999265 | KX999186 | KX999226 |
| D. inconspicua | CBS 133813 | Maytenus ilicifolia | Brazil | KC343123 | KC343365 | KC343607 | KC343849 | KC344091 |
| D. infecunda | CBS 133812 | Schinus terebinthifolius | Brazil | KC343126 | KC343368 | KC343610 | KC343852 | KC344094 |
| D. juglandicola | CFCC 51134 | Juglans mandshurica | China | KU985101 | KX024616 | KX024622 | KX024628 | KX024634 |
| D. kadsurae | CFCC 52586 | Kadsura longipedunculata | China | MH121521 | MH121439 | MH121479 | MH121563 | MH121600 |
| D. litchicola | BRIP 54900 | Litchi chinensis | Australia | JX862533 | NA | NA | JX862539 | KF170925 |
| D. lusitanicae | CBS 123212 | Foeniculum vulgare | Portugal | KC343136 | KC343378 | KC343620 | KC343862 | KC344104 |
| D. masirevicii | BRIP 57892a | Helianthus annuus | Australia | KJ197277 | NA | NA | KJ197239 | KJ197257 |
| D. middletonii | BRIP 54884e | Rapistrum rugostrum | Australia | KJ197286 | NA | NA | KJ197248 | KJ197266 |
| D. millettiae | GUCC9167 | Millettia reticulata | China | MK398674 | MK502086 | NA | MK480609 | MK502089 |
| D. miriciae | BRIP 54736j | Helianthus annuus | Australia | KJ197282 | NA | NA | KJ197244 | KJ197262 |
| D. musigena | CBS 129519 | Musa sp. | Australia | KC343143 | KC343385 | KC343627 | KC343869 | KC344111 |
| D. neilliae | CBS 144.27 | Spiraea sp. | USA | KC343144 | KC343386 | KC343628 | KC343870 | KC344112 |
| D. neoarctii | CBS 109490 | Ambrosia trifida | USA | KC343145 | KC343387 | KC343629 | KC343871 | KC344113 |
| D. nothofagi | BRIP 54801 | Nothofagus cunninghamii | Australia | JX862530 | NA | NA | JX862536 | KF170922 |
| D. novem | CBS 127270 | Glycine max | Croatia | KC343155 | KC343397 | KC343640 | KC343881 | KC344123 |
| D. oraccinii | CGMCC 3.17531 | Camellia sinensis | China | KP267863 | NA | KP293517 | KP267937 | KP293443 |
| D. ovalispora | ICMP20659 | Citrus limon | China | KJ490628 | NA | KJ490570 | KJ490507 | KJ490449 |
| D. ovoicicola | CGMCC 3.17093 | Citrus sp. | China | KF576265 | KF576223 | NA | KF576240 | KF576289 |
| D. osmanthi | GUCC9165 | Osmanthus fragrans | China | MK398675 | MK502087 | NA | MK480610 | MK502090 |
| D. padina | CFCC 52590 | Padus racemosa | China | MH121525 | MH121443 | MH121483 | MH121567 | MH121604 |
| D. pandanicola | MFLU 18-0006 | Pandanus sp. | Thailand | MG646974 | NA | NA | NA | MG646930 |
| D. pascoei | BRIP 54847 | Persea americana | Australia | JX862532 | NA | NA | JX862538 | KF170924 |
| D. passifloricola | CBS 141329 | Passiflora foetida | Malaysia | KX228292 | NA | KX228367 | NA | KX228387 |
| D. perseae | CBS 151.73 | Persea gratissima | Netherlands | KC343173 | KC343415 | KC343657 | KC343899 | KC344141 |
| D. pescicola | MFLUCC 16-0105 | Prunus persica | China | KU557555 | KU557603 | NA | KU557623 | KU557579 |
| D. phaseolorum | AR4203 | Phaseolus vulgaris | USA | KJ590738 | NA | KJ659220 | NA | KP004507 |
| D. podocarpi-macrophylli | CGMCC 3.18281 | Podocarpus macrophyllus | China | KX986774 | KX999278 | KX999246 | KX999167 | KX999207 |
| D. pseudomangiferae | CBS 101339 | Mangifera indica | Dominican Republic | KC343181 | KC343423 | KC343665 | KC343907 | KC344149 |
| D. pseudophoenicicola | CBS 462.69 | Phoenix dactylifera | Spain | KC343184 | KC343426 | KC343668 | KC343910 | KC344152 |
| D. psoraleae-pinnatae | CBS 136413 | Psoralea pinnata | South Africa | KF777159 | NA | NA | NA | KF777252 |
| D. pulla | CBS 338.89 | Hedera helix | Yugoslavia | KC343152 | KC343394 | KC343636 | KC343878 | KC344120 |
| D. racemosae | CBS 143770 | Euclea racemosa | South Africa | MG600223 | MG600219 | MG600221 | MG600225 | MG600227 |
| D. ravennica | MFLUCC 15-0479 | Tamarix sp. | Italy | KU900335 | NA | NA | KX365197 | KX432254 |
| D. rhusicola | CBS 129528 | Rhus pendulina | South Africa | JF951146 | KC843124 | NA | KC843100 | KC843205 |
| D. rosae | MFLU 17-1550 | Rosa sp. | Thailand | MG828894 | NA | NA | NA | MG843878 |
| D. rosicola | MFLU 17-0646 | Rosa sp. | UK | MG828895 | NA | NA | MG829270 | MG843877 |
| D. rudis | AR3422 | Laburnum anagyroides | Austria | KC843331 | KC843146 | NA | KC843090 | KC843177 |
| D. sackstonii | BRIP 54669b | Helianthus annuus | Australia | KJ197287 | NA | NA | KJ197249 | KJ197267 |
| D. salicicola | BRIP 54825 | Salix purpurea | Australia | JX862531 | NA | NA | JX862537 | JX862531 |
| D. sambucusii | CFCC 51986 | Sambucus williamsii | China | KY852495 | KY852499 | KY852503 | KY852507 | KY852511 |
| D. schini | CBS 133181 | Schinus terebinthifolius | Brazil | KC343191 | KC343433 | KC343675 | KC343917 | KC344159 |
| D. schoeni | MFLU 15-1279 | Schoenus nigricans | Italy | KY964226 | KY964139 | NA | KY964182 | KY964109 |
| D. sennicola | CFCC 51634 | Senna bicapsularis | China | KY203722 | KY228873 | KY228879 | KY228883 | KY228889 |
| D. serafiniae | BRIP 55665a | Helianthus annuus | Australia | KJ197274 | NA | NA | KJ197236 | KJ197254 |
| D. shaanxiensis | CFCC 53106 | on branches of liana | China | MK432654 | MK442976 | MK443001 | MK578130 | NA |
| CFCC 53107 | on branches of liana | China | MK432655 | MK442977 | MK443002 | MK578131 | NA | |
| D. siamensis | MFLUCC 10-573a | Dasymaschalon sp. | Thailand | JQ619879 | NA | NA | JX275393 | JX275429 |
| D. sojae | FAU635 | Glycine max | USA | KJ590719 | KJ612116 | KJ659208 | KJ590762 | KJ610875 |
| D. sterilis | CBS 136969 | Vaccinium corymbosum | Italy | KJ160579 | KJ160548 | MF418350 | KJ160611 | KJ160528 |
| D. stictica | CBS 370.54 | Buxus sampervirens | Italy | KC343212 | KC343454 | KC343696 | KC343938 | KC344180 |
| D. subclavata | ICMP20663 | Citrus unshiu | China | KJ490587 | NA | KJ490529 | KJ490466 | KJ490408 |
| D. subcylindrospora | MFLU 17-1195 | Salix sp. | China | MG746629 | NA | NA | MG746630 | MG746631 |
| D. subellipicola | MFLU 17-1197 | on dead wood | China | MG746632 | NA | NA | MG746633 | MG746634 |
| D. subordinaria | CBS 464.90 | Plantago lanceolata | New Zealand | KC343214 | KC343456 | KC343698 | KC343940 | KC344182 |
| D. tectonendophytica | MFLUCC 13-0471 | Tectona grandis | China | KU712439 | KU749354 | NA | KU749367 | KU749354 |
| D. tectonigena | MFLUCC 12-0767 | Tectona grandis | China | KU712429 | KU749358 | NA | KU749371 | KU743976 |
| D. terebinthifolii | CBS 133180 | Schinus terebinthifolius | Brazil | KC343216 | KC343458 | KC343700 | KC343942 | KC344184 |
| D. ternstroemia | CGMCC 3.15183 | Ternstroemia gymnanthera | China | KC153098 | NA | NA | KC153089 | NA |
| D. thunbergii | MFLUCC 10-576a | Thunbergia laurifolia | Thailand | JQ619893 | JX197440 | NA | JX275409 | JX275449 |
| D. tibetensis | CFCC 51999 | Juglandis regia | China | MF279843 | MF279888 | MF279828 | MF279858 | MF279873 |
| D. ueckerae | FAU656 | Cucumis melo | USA | KJ590726 | KJ612122 | KJ659215 | KJ590747 | KJ610881 |
| D. ukurunduensis | CFCC 52592 | Acer ukurunduense | China | MH121527 | MH121445 | MH121485 | MH121569 | NA |
| D. unshiuensis | CFCC 52594 | Carya illinoensis | China | MH121529 | MH121447 | MH121487 | MH121571 | MH121606 |
| D. vaccinii | CBS 160.32 | Oxycoccus macrocarpos | USA | KC343228 | KC343470 | KC343712 | KC343954 | KC344196 |
| D. velutina | CGMCC 3.18286 | Neolitsea sp. | China | KX986790 | NA | KX999261 | KX999182 | KX999223 |
| D. viniferae | JZB320071 | Vitis vinifera | China | MK341551 | MK500107 | NA | MK500119 | MK500112 |
| D. xishuangbanica | CGMCC 3.18282 | Camellia sinensis | China | KX986783 | NA | KX999255 | KX999175 | KX999216 |
| D. yunnanensis | CGMCC 3.18289 | Coffea sp. | China | KX986796 | KX999290 | KX999267 | KX999188 | KX999228 |
| Diaporthella corylina | CBS 121124 | Corylus sp. | China | KC343004 | KC343246 | KC343488 | KC343730 | KC343972 |
Newly sequenced material is indicated in bold type. NA, not applicable.