Table 1.

List of long non-coding RNAs (lncRNAs) identified in plants under fungal pathogen stress.

Plant Species	Stress/Response	Approaches	Type(s) of LncRNAs	LncRNAs Number	DE-LncRNAs Number	Ref.
Arabidopsis	light	tiling array	LncNATs	37,238	1392	[24]
	drought, cold, high-salt, ABA	tiling array&RNA-seq	LincRNAs	6480	1832	[25]
	Fusarium oxysporum	ssRNA-seq	LncNAT, TAR	2346/770	15/25	[40]
	Pseudomonas syringae	In silico-EST	LincRNAs	1(ELENA1)	1	[41]
Barly	Fusarium graminearum	RNA-seq	LncRNAs	12,366	604	[42]
Brassica napus	Sclerotinia sclerotiorum	RNA-seq	lincRNAs	3181	931	[43]
	-	RNA seq	LncRNAs	1885	-	[34]
Camelina sativa	drought	FlcDNA seq	LncRNAs	5390	7	[35]
Cassava	cold, drought	ssRNA-seq	LncRNAs, lncNATs	682/42	318	[31]
Cotton	Verticillium dahliae	RNA-seq	lincRNAs, LncNATs	13,452/1297	1236/63	[44]
Maize	Rhizophagus irregularis	ssRNA-seq	LncRNAs	9541	63	[45]
	-	EST, Gen-seq&RNA-seq	LncRNAs	1704	tissue-specific	[27]
	nitrogen	RNA-seq	lincRNAs, linncRNAs	7245	637	[28]
	drought	RNA-seq	LncRNAs	1724	664	[29]
	-	FlcDNA seq	LncRNAs	2492	-	[30]
Melon	Podosphaera xanthii	RNA-Seq	LncRNAs	11,612	611	[46]
Poplar	Melampsora larici-populina	RNA-seq	LncRNAs	3994	53	[47]
Populus trichocarpa	drought	RNA-Seq	LincRNAs	2542	504	[26]
Potato	Pectobacterium carotovorum	ssRNA-seq	LincRNAs	1113	559	[48]
Rice	sexual reproduction	ssRNA-seq	LincRNAs, lncNATs	1624/600	tissue-specific	[32]
	Nitrogen, phosphate starvation	ssRNA-seq	LncRNAs	2588	776	[33]
Tomato	Phytophthora infestans	RNA-Seq	LncRNAs	28,256	688	[49]
	Tomato yellow leaf curl virus	ssRNA-seq	LincRNAs, lncNATs	1289/276	529	[50]
Wheat	Blumeria graminis (Bgt)	Microarray&RNA-Seq	LncRNAs	125	52	[39]
	Puccinia striiformis (Pst)	In silico-EST	LncRNAs, NAT	3/1	3/1	[37]
	Bgt, Pst	RNA-Seq	LncRNAs	58,218	254/52	[5]
	heat, drought and salt	RNA-Seq	LncRNAs	44,698	413/14,162	[38]

Note: TAR, transcriptionally active regions; lincRNA, long intergenic ncRNAs; linncRNA, long intron ncRNAs; lncNAT, natural antisense transcription.