Table 3.
Summary of important regulatory transcriptional factor family genes identified from transcriptome data.
| BRAD ID | E-Value | Identity | TAIR Description | Log2 Fold Change | |||
|---|---|---|---|---|---|---|---|
| A. thaliana Id | TF Family | Gene Annotation | Gene Description | RPCC vs. GCC | |||
| AP2/ERF Transcription Factors | |||||||
| Bra011782 | 0 | 100 | AT4G37750 | AP2 | ANT, CKC, CKC1, DRG | Integrase-type DNA-binding superfamily protein | 2.21 |
| Bra017656 | 0 | 99.88 | AT4G34410 | ERF | RRTF1 | Redox responsive transcription factor 1 | 6.90 |
| Bra011529 | 0 | 99.75 | AT4G34410 | ERF | RRTF1 | Redox responsive transcription factor 1 | 6.72 |
| Bra019087 | 0 | 100 | AT2G20350 | ERF | − | Integrase-type DNA-binding superfamily protein | 6.50 |
| Bra034624 | 0 | 99.8 | AT4G34410 | ERF | RRTF1 | Redox responsive transcription factor 1 | 6.16 |
| Bra028290 | 0 | 100 | AT5G51990 | ERF | CBF4, DREB1D | C-repeat-binding factor 4 | 5.94 |
| Bra019777 | 0 | 98.04 | AT1G12610 | ERF | DDF1 | Integrase-type DNA-binding superfamily protein | 5.06 |
| Bra037630 | 0 | 96.93 | AT2G44840 | ERF | ATERF13, EREBP, ERF13 | Ethylene-responsive element binding factor 13 | 5.00 |
| Bra015882 | 0 | 94.68 | AT1G74930 | ERF | ORA47 | Integrase-type DNA-binding superfamily protein | 4.96 |
| Bra027612 | 0 | 100 | AT1G63030 | ERF | DDF2 | Integrase-type DNA-binding superfamily protein | 4.88 |
| Bra016763 | 0 | 100 | AT1G12610 | ERF | DDF1 | Integrase-type DNA-binding superfamily protein | 4.84 |
| Bra024539 | 0 | 99.48 | AT1G22810 | ERF | − | Integrase-type DNA-binding superfamily protein | 4.79 |
| Bra026963 | 0 | 98.87 | AT1G12610 | ERF | DDF1 | Integrase-type DNA-binding superfamily protein | 4.72 |
| Bra031069 | 0 | 100 | AT1G19210 | ERF | − | Integrase-type DNA-binding superfamily protein | 4.64 |
| Bra028759 | 0 | 94.66 | AT5G05410 | ERF | DREB2,DREB2A | DRE-binding protein 2A | 4.58 |
| Bra015660 | 0 | 100 | AT1G77640 | ERF | − | Integrase-type DNA-binding superfamily protein | 4.04 |
| Bra028291 | 0 | 100 | AT5G52020 | ERF | − | Integrase-type DNA-binding superfamily protein | 3.98 |
| Bra016400 | 0 | 100 | AT1G21910 | ERF | − | Integrase-type DNA-binding superfamily protein | 3.95 |
| Bra032901 | 0 | 100 | AT1G28370 | ERF | ATERF11,ERF11 | ERF domain protein 11 | 3.66 |
| Bra014925 | 0 | 100 | AT3G23230 | ERF | − | Integrase-type DNA-binding superfamily protein | 3.64 |
| Bra027614 | 0 | 85 | AT1G12630 | ERF | − | Integrase-type DNA-binding superfamily protein | 3.62 |
| Bra002377 | 0 | 100 | AT5G21960 | ERF | − | Integrase-type DNA-binding superfamily protein | 3.62 |
| Bra010881 | 0 | 99.46 | AT1G28360 | ERF | ATERF12,ERF12 | ERF domain protein 12 | 3.57 |
| Bra016136 | 0 | 100 | AT1G71450 | ERF | − | Integrase-type DNA-binding superfamily protein | 3.36 |
| Bra003780 | 0 | 100 | AT1G74930 | ERF | ORA47 | Integrase-type DNA-binding superfamily protein | 3.29 |
| Bra036022 | 0 | 99.44 | AT1G21910 | ERF | − | Integrase-type DNA-binding superfamily protein | 3.28 |
| Bra016518 | 3.00E−162 | 95.32 | AT1G19210 | ERF | − | Integrase-type DNA-binding superfamily protein | 3.23 |
| Bra029147 | 0 | 100 | AT5G52020 | ERF | − | Integrase-type DNA-binding superfamily protein | 3.21 |
| Bra024953 | 0 | 100 | AT5G47230 | ERF | ATERF-5, ATERF5, ERF5 | Ethylene responsive element binding factor 5 | 3.14 |
| Bra040309 | 0 | 99.15 | AT1G44830 | ERF | − | Integrase-type DNA-binding superfamily protein | 3.14 |
| Bra032665 | 0 | 100 | AT2G44840 | ERF | ATERF13, EREBP, ERF13 | Ethylene-responsive element binding factor 13 | 3.00 |
| Bra030957 | 0 | 99.3 | AT1G53170 | ERF | ATERF-8, ATERF8, ERF8 | Ethylene response factor 8 | 2.99 |
| Bra010880 | 0 | 98.27 | AT1G28370 | ERF | ATERF11, ERF11 | ERF domain protein 11 | 2.91 |
| Bra011383 | 0 | 98.7 | AT4G32800 | ERF | − | Integrase-type DNA-binding superfamily protein | 2.91 |
| Bra015478 | 1.00E−10 | 74.84 | AT2G44840 | ERF | ATERF13, EREBP, ERF13 | Ethylene-responsive element binding factor 13 | 2.86 |
| Bra021048 | 0 | 97.12 | AT4G17500 | ERF | ATERF-1, ERF-1 | Ethylene responsive element binding factor 1 | 2.63 |
| Bra024954 | 0 | 99.54 | AT5G47220 | ERF | ATERF-2, ATERF2, ERF2 | Ethylene responsive element binding factor 2 | 2.61 |
| Bra008952 | 0 | 98.76 | AT5G11590 | ERF | TINY2 | Integrase-type DNA-binding superfamily protein | 2.53 |
| Bra035732 | 0 | 97.33 | AT5G51190 | ERF | − | Integrase-type DNA-binding superfamily protein | 2.51 |
| Bra040158 | 0 | 100 | AT4G17490 | ERF | ATERF6, ERF-6-6, ERF6 | Ethylene responsive element binding factor 6 | 2.48 |
| Bra017493 | 0 | 98.76 | AT5G47230 | ERF | ATERF-5, ATERF5, ERF5 | Ethylene responsive element binding factor 5 | 2.33 |
| Bra040159 | 0 | 100 | AT4G17500 | ERF | ATERF-1,ERF-1 | Ethylene responsive element binding factor 1 | 2.22 |
| Bra034535 | 0 | 100 | AT4G32800 | ERF | − | Integrase-type DNA-binding superfamily protein | 2.11 |
| Bra027736 | 0 | 97.6 | AT1G64380 | ERF | − | Integrase-type DNA-binding superfamily protein | 2.00 |
| bHLH transcription factors | |||||||
| Bra033690 | 0 | 100 | AT5G43650 | bHLH | BHLH92 | Basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 4.69 |
| Bra027501 | 0 | 100 | AT5G43650 | bHLH | BHLH92 | Basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 2.68 |
| Bra035639 | 0 | 97.42 | AT5G56960 | bHLH | − | Basic helix-loop-helix (bHLH) DNA-binding family protein | 2.21 |
| Bra036640 | 0 | 100 | AT1G62975 | bHLH | − | Basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 2.20 |
| bZIP transcription factors | |||||||
| Bra010035 | 0 | 94.65 | AT5G49450 | bZIP | AtbZIP1,bZIP1 | Basic leucine-zipper 1 | 3.10 |
| C2H2 transcription factors | |||||||
| Bra006692 | 1.00E−160 | 88.04 | AT5G59820 | C2H2 | RHL41, ZAT12 | C2H2-type zinc finger family protein | 4.46 |
| Bra002528 | 0 | 98.96 | AT5G59820 | C2H2 | RHL41, ZAT12 | C2H2-type zinc finger family protein | 3.43 |
| Bra022436 | 0 | 97.64 | AT3G19580 | C2H2 | AZF2, ZF2 | Zinc-finger protein 2 | 2.99 |
| Bra010922 | 0 | 99.57 | AT1G27730 | C2H2 | STZ, ZAT10 | Salt tolerance zinc finger | 2.96 |
| Bra001752 | 0 | 99.87 | AT3G19580 | C2H2 | AZF2, ZF2 | Zinc-finger protein 2 | 2.96 |
| Bra032845 | 0 | 100 | AT1G27730 | C2H2 | STZ, ZAT10 | Salt tolerance zinc finger | 2.81 |
| Bra038219 | 0 | 98.11 | AT3G19580 | C2H2 | AZF2, ZF2 | Zinc-finger protein 2 | 2.50 |
| C3H transcription factors | |||||||
| Bra000170 | 1.00E−156 | 100 | AT2G40140 | C3H | ATSZF2, CZF1, SZF2, ZFAR1 | Zinc finger (CCCH-type) family protein | 2.77 |
| Bra007205 | 0 | 98.79 | AT3G55980 | C3H | ATSZF1, SZF1 | Salt-inducible zinc finger 1 | 2.41 |
| Bra004982 | 4.00E−135 | 81.1 | AT2G40140 | C3H | ATSZF2, CZF1, SZF2, ZFAR1 | Zinc finger (CCCH-type) family protein | 2.16 |
| Dof transcription factors | |||||||
| Bra014297 | 0 | 98.01 | AT1G51700 | Dof | ADOF1, DOF1 | DOF zinc finger protein 1 | 2.18 |
| GRAS transcription factors | |||||||
| Bra021063 | 0 | 99.75 | AT4G17230 | GRAS | SCL13 | SCARECROW-like 13 | 2.06 |
| Bra033813 | 0 | 91.33 | AT3G46600 | GRAS | − | GRAS family transcription factor | 2.02 |
| HD-ZIP transcription factors | |||||||
| Bra005259 | 0 | 100 | AT2G36610 | HD-ZIP | ATHB22, HB22 | Homeobox protein 22 | 3.85 |
| Bra016300 | 0 | 100 | AT1G26960 | HD-ZIP | AtHB23, HB23 | Homeobox protein 23 | 2.02 |
| LBD transcription factors | |||||||
| Bra021433 | 5.00E-124 | 83.53 | AT3G02550 | LBD | LBD41 | LOB domain-containing protein 41 | 2.90 |
| MADS transcription factors | |||||||
| Bra017376 | 0 | 99.84 | AT2G03710 | MIKC_ MADS | AGL3,SEP4 | K-box region and MADS-box transcription factor family protein | 2.33 |
| Bra024521 | 0 | 99.59 | AT1G22590 | M-type_ MADS | AGL87 | AGAMOUS-like 87 | 2.10 |
| Bra005166 | 0 | 100 | AT2G28700 | M-type_ MADS | AGL46 | AGAMOUS-like 46 | 2.05 |
| MYB transcription factors | |||||||
| Bra004162 | 2.00E−111 | 84.01 | AT1G66390 | MYB | ATMYB90, MYB90, PAP2 | MYB domain protein 90 | 11.38 |
| Bra039763 | 0 | 92.86 | AT1G56650 | MYB | ATMYB75, MYB75, PAP1, SIAA1 | Production of anthocyanin pigment 1 | 6.87 |
| Bra029990 | 0 | 100 | AT3G50060 | MYB | MYB77 | MYB domain protein 77 | 3.89 |
| Bra012910 | 0 | 100 | AT3G50060 | MYB | MYB77 | MYB domain protein 77 | 2.82 |
| Bra013000 | 9.00E−118 | 100 | AT5G60890 | MYB | ATMYB34, ATR1, MYB34 | MYB domain protein 34 | 2.51 |
| Bra016164 | 0 | 100 | AT1G71030 | MYB_ related | ATMYBL2, MYBL2 | MYB-like 2 | 5.55 |
| Bra007957 | 0 | 97.7 | AT1G71030 | MYB_ related | ATMYBL2, MYBL2 | MYB-like 2 | 4.06 |
| Bra022637 | 5.00E−79 | 89.91 | AT5G53200 | MYB_ related | TRY | Homeodomain-like superfamily protein | 2.34 |
| NAC transcription factors | |||||||
| Bra008553 | 0 | 94.59 | AT4G01550 | NAC | anac069, NAC069 | NAC domain containing protein 69 | 4.31 |
| Bra020188 | 0 | 99.8 | AT5G22380 | NAC | anac090, NAC090 | NAC domain containing protein 90 | 3.14 |
| Bra006624 | 0 | 99.58 | AT5G22380 | NAC | anac090, NAC090 | NAC domain containing protein 90 | 2.86 |
| Bra027238 | 0 | 100 | AT3G15500 | NAC | ANAC055,ATNAC3,NAC055, NAC3 | NAC domain containing protein 3 | 2.62 |
| Bra037283 | 0 | 99.52 | AT2G17040 | NAC | anac036, NAC036 | NAC domain containing protein 36 | 2.17 |
| Bra013034 | 0 | 98.94 | AT2G17040 | NAC | anac036, NAC036 | NAC domain containing protein 36 | 2.08 |
| WRKY transcription factors | |||||||
| Bra023112 | 0 | 99.53 | AT2G37260 | WRKY | ATWRKY44, DSL1,TTG2, WRKY44 | WRKY family transcription factor family protein | 5.13 |
| Bra014426 | 0 | 99.88 | AT2G46400 | WRKY | ATWRKY46, WRKY46 | WRKY DNA-binding protein 46 | 3.87 |
| Bra003588 | 0 | 99.5 | AT1G80840 | WRKY | ATWRKY40, WRKY40 | WRKY DNA-binding protein 40 | 3.81 |
| Bra035148 | 0 | 100 | AT1G80840 | WRKY | ATWRKY40, WRKY40 | WRKY DNA-binding protein 40 | 3.69 |
| Bra005210 | 0 | 100 | AT2G37260 | WRKY | ATWRKY44, DSL1,TTG2, WRKY44 | WRKY family transcription factor family protein | 3.54 |
| Bra035147 | 0 | 99.52 | AT1G80850 | WRKY | − | DNA glycosylase superfamily protein | 3.53 |
| Bra033158 | 0 | 98.49 | AT4G11070 | WRKY | AtWRKY41, WRKY41 | WRKY family transcription factor | 2.95 |
| Bra020196 | 0 | 90.34 | AT5G22570 | WRKY | ATWRKY38, WRKY38 | WRKY DNA-binding protein 38 | 2.87 |
| Bra010032 | 0 | 99.58 | AT5G49520 | WRKY | ATWRKY48, WRKY48 | WRKY DNA-binding protein 48 | 2.86 |
| Bra019265 | 0 | 100 | AT4G23810 | WRKY | ATWRKY53, WRKY53 | WRKY family transcription factor | 2.65 |
| Bra013731 | 0 | 99.57 | AT4G23800 | WRKY | − | HMG (high mobility group) box protein | 2.41 |
| Bra023998 | 0 | 100 | AT4G31550 | WRKY | WRKY11 | WRKY DNA-binding protein 11 | 2.27 |
| Bra031900 | 0 | 98.34 | AT5G64810 | WRKY | WRKY51 | WRKY DNA-binding protein 51 | 2.13 |