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. 2020 May 5;11:421. doi: 10.3389/fgene.2020.00421

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Copyright © 2020 Smit, Vivier and Young.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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(A) The total number of VviTPS-like gene regions on the primary contigs and haplotigs is shown for the draft diploid genomes of Cabernet Sauvignon (CS), Carménère (CR), and Chardonnay (CH). (A) The total number of VviTPS-like gene regions were further classified by the type of open reading frame (ORF): disrupted (d-ORF) contain frameshifts and/or premature stop codons that render the gene non-functional; full-length (fl-ORF) are predicted to be functional; and partial genes that have four less exons (i.e., pseudogenes). The combined percentage distribution of these ORFs across the haplotypes is shown in (B). The percentage of complete gene regions, the sum of fl-ORF and d-ORF, that are duplicated (degree of similarity (I’) > 80%) or hemizygous is shown in (C).