Table 1.
Candida species | Primer name | Forward(5′-3′) | Reverse(5′-3′) | Amplified fragment size (bp) | References |
---|---|---|---|---|---|
C. albicans complexes | HWP1 | GCTACCACTTCAGAATCATCATC | GCACCTTCAGTCGTAGAGACG |
C. albicans:839 and 941 C. africana:700 C. dubliniensis:569 |
Shan,2014 |
C. glabrata complexes |
GLA NIV BRA |
CGGTTGGTGGGTGTTCTGC AGGGAGGAGTTTGTATCTTTCAAC GGGACGGTAAGTCTCCCG |
ACCAGAGGGCGCAATGTG |
C. glabrata:397 C. bracarensis: 223 C. nivariensis:293 |
Li,2014 |
C. parapsilosis complexes |
mCPF mCOF mCMF |
TTTGCTTTGGTAGGCCTTCTA TAAGTCAACTGATTAACTAAT AACTGCAATCCTTTTCTTTCTA |
AATATCTGCAATTCATATTACT |
C. parapsilosis:171 C. orthopsilosis:109 C. metapsilosis:217 |
Asadzadeh,2015 |
Rare yeast | NL1,NL4 | GCATATCAATAAGCGGAGGAAAAG-3’ | GGTCCGTGTTTCAAGACGG | 500–600 | Leaw,2006 |
1Shan Y, Fan S, Liu X, et al. Prevalence of Candida albicans-closely related yeasts, Candida africana and Candida dubliniensis, in vulvovaginal candidiasis. Med Mycol, 2014, 52 (6): 636–40.
2Li J, Shan Y, Fan S, et al. Prevalence of Candida nivariensis and Candida bracarensis in vulvovaginal Candidiasis. Mycopathologia, 2014, 178 (3, 4): 279–83.
3Asadzadeh M, Ahmad S, Hagen F, et al. Simple, Low-Cost Detection of Candida parapsilosis complex isolates and molecular fingerprinting of Candida orthopsilosis strains in Kuwait by ITS region sequencing and amplified fragment length polymorphism analysis. PLoS One, 2015, 10 (11): e0142880.
4Leaw SN, Chang HC, Sun HF, et al. Identification of medically important yeast species by sequence analysis of the internal transcribed spacer regions. J Clin Microb, 2006, 44 (3): 693–9.