Table 2.

GO Terms in biologic process category enriched in CTNS^KO iPSCs

GO Term	Term	P Value	numDEInCat	numInCat
GO:0016192	Vesicle-mediated transport	p<0.001	769	1281
GO:0016236	Macroautophagy	p<0.001	202	299
GO:0006914	Autophagy	p<0.001	269	416
GO:0045454	Cell redox homeostasis	p<0.001	46	58
GO:0000045	Autophagosome assembly	p<0.001	57	74
GO:0045022	Early endosome to late endosome transport	p<0.001	32	36
GO:0006900	Membrane budding	p<0.001	56	72
GO:0000422	Mitophagy	p<0.001	132	200
GO:0032006	Regulation of Tor signaling	p<0.001	50	63
GO:0006890	Retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	p<0.001	31	36
GO:1901800	Positive regulation of proteasomal protein catabolic process	p<0.001	67	93
GO:0032008	Positive regulation of TOR signaling	p<0.001	23	26
GO:0032436	Positive regulation of proteasomal ubiquitin-dependent protein catabolic process	p<0.001	59	80
GO:0006623	Protein targeting to vacuole	p<0.001	26	29
GO:0045324	Late endosome to vacuole transport	p<0.001	1	14
GO:0031929	TOR signaling	p<0.001	57	75
GO:0070534	Protein K63-linked ubiquitination	p<0.001	33	42