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. Author manuscript; available in PMC: 2020 May 13.
Published in final edited form as: J Comput Chem. 2010 Jun;31(8):1644–1655. doi: 10.1002/jcc.21448

Figure 9:

Figure 9:

Stacking van der Waals energies for all ten possible base pairs of the 3445 model, calculated by simultaneous translation of the second base along the axis perpendicular to the molecule in both directions, and rotation in the standard coordinate frame (see text). The AMBER reference and 3445 model energies are drawn with solid and dotted lines, respectively.