Table 1.

Bioinformatics Tools and Databases

Resource	URL
Primer3	http://frodo.wi.mit.edu/primer3/
NCBI Blast	http://blast.ncbi.nlm.nih.gov
MEME	http://meme-suite.org/
Maize Genetics and Genomics Database	https://www.maizegdb.org/
Maize transposable element (TE) database	http://maizetedb.org/~maize/
Transdecoder program	https://github.com/TransDecoder/TransDecoder/wiki
Biopython	http://biopython.org/
Blast software and database	https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download
Genepattern	https://genepattern.broadinstitute.org/gp/pages/login.jsf
Bedtools	http://bedtools.readthedocs.io/en/latest/index.html