TABLE 2.

Summary of the genetic diversity measures across South African Pig populations.

POP	N	%SNP	MAF ± SD	NSNP	HO ± SD	HE ± SD	FIS ± SD	P-value
MOP	27	92	0.262 ± 0.149	52,925	0.299 ± 0.129	0.369 ± 0.131	0.198 ± 0.134	0.495
CAP	24	94	0.264 ± 0.147	54,078	0.332 ± 0.140	0.371 ± 0.126	0.117 ± 0.155	0.582
ORT	22	93	0.259 ± 0.153	52,238	0.315 ± 0.145	0.370 ± 0.130	0.163 ± 0.113	0.553
ALN	15	94	0.238 ± 0.157	53,580	0.336 ± 0.160	0.359 ± 0.134	0.056 ± 0.168	0.695
LWT	18	93	0.227 ± 0.161	49,773	0.358 ± 0.177	0.348 ± 0.144	0.023 ± 0.009	0.721
SAL	19	94	0.221 ± 0.162	49,191	0.372 ± 0.186	0.345 ± 0.144	0.052 ± 0.085	0.704
DUR	19	94	0.177 ± 0.168	40,632	0.359 ± 0.182	0.337 ± 0.147	0.067 ± 0.153	0.764
KOL	20	94	0.173 ± 0.167	39,560	0.364 ± 0.182	0.339 ± 0.144	0.051 ± 0.087	0.727
WIN	19	95	0.220 ± 0.164	47,402	0.385 ± 0.171	0.360 ± 0.134	0.056 ± 0.158	0.733
WAT	28	82	0.076 ± 0.109	3,967	0.188 ± 0.155	0.204 ± 0.151	0.398 ± 0.475	0.710

%_SNP used to calculate MAF analysis; N_SNP, the number of SNPs in the subset 62,163 SNP; H_O, observed heterozygosity; H_E, expected heterozygosity; SD, standard deviation; F_IS, inbreeding co-efficient; MAF, minor allele frequency, P < 0.05.