Transition of Early to Late Naive State is Associated with Increased XIST Expression and Reduction in X-Linked Gene Expression
(A) Schematic representation of different stages and corresponding X chromosome states of conversion of primed hPSCs to naive state as described in Sahakyan et al., 2017a. In this study, we performed analysis of the scRNA-seq dataset acquired from the early and late naive state.
(B) Comparison of XIST expression (RPKM) between early naive (n = 28) cells and late naive (n = 30) cells. p < 0.00001 (Mann-Whitney U test).
(C) Comparison of X-linked gene expression (n = 57 genes) between early naïve (n = 28) cells and late naive (n = 30) cells. p < 0.00001 (Mann-Whitney U test).