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(A) The position of Y chromosome genes and gap-closing on the short arm. The gap regions are black, the gap-closed regions are red, and other regions are gray. (B) Comparison among the mapping reads to the GRCm38.p6 reference genome (upper row), the mapping reads to the gap-closed genome (middle row), and the mapping of contigs to the gap-closed genome (lower row). This was visualized with the Integrative Genomics Viewer, with the range of the Y chromosome from 560,000 to 680,000 bp.
