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. Author manuscript; available in PMC: 2021 May 12.
Published in final edited form as: J Chem Theory Comput. 2020 Apr 30;16(5):3430–3444. doi: 10.1021/acs.jctc.0c00191

Figure 7.

Figure 7.

Structural characterization of the c-kit2 WT GQ in the linked c-kit2/c-kit* system. (A) Per-nucleotide RMSD, (B) per-nucleotide RMSF, and (C) central structures of the top three clusters of the c-kit2 GQ from RMSD-based clustering with associated occupancy percentages. Error bars in panels (A) and (B) represent the standard deviation of the averages of three replicate simulations.