. Author manuscript; available in PMC: 2021 Mar 25.

Published in final edited form as: Cell Syst. 2020 Mar 4;10(3):265–274.e11. doi: 10.1016/j.cels.2020.02.003

KEY RESOURCES TABLE.

REAGENT or RESOURCE	SOURCE	IDENTIFIER
Deposited Data
Lung dataset	(Treutlein et al., 2014)	GEO id: GSE52583
LPS dataset	(Shalek et al., 2014)	GEO id: GSE41265
MARS-seq dataset	(Paul et al., 2015)	http://compgenomics.weizmann.ac.il/tanay/?pageid=649
Olsson dataset	(Olsson et al., 2016)	synapse id syn4975060
Live imaging dataset for the C. elegans	(Murray et al., 2012)	Waterston lab
Software and Algorithms
Scribe	This paper	https://github.com/aristoteleo
rccm	Implemented based on: https://github.com/cjbayesian/rccm	https://github.com/cole-trapnell-lab/rccm
scRNASeqSim	This paper	https://github.com/cole-trapnell-lab/scRNASeqSim
Other
Supplementary software	This paper	Supplementary software