TABLE 3.
Genomic prediction accuracies of kernel Zn concentration in the DTMA panel, DH1 population, and DH2 population, estimated from the rAmpSeq marker datasets with different levels of quality filtered with MAF.
Population | MAF | Number of markers | Prediction accuracy |
DTMA | 0.10 | 4847 | 0.35 |
0.20 | 2960 | 0.35 | |
0.30 | 1731 | 0.31 | |
0.40 | 811 | 0.27 | |
DH1 | 0.10 | 3722 | 0.61 |
0.20 | 3098 | 0.61 | |
0.30 | 1723 | 0.62 | |
0.40 | 1077 | 0.48 | |
DH2 | 0.10 | 2588 | 0.5 |
0.20 | 2392 | 0.49 | |
0.30 | 2096 | 0.52 | |
0.40 | 1429 | 0.45 |